Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04643 ATGAACATGGATAACCAAAGAAAGGAATCCACATGGCGCAAGAAGATTGAAATCAAGAAGCTTGACAAACAAGCCAACAAACAAGTTACATTCTCGAAAAGAAGACAAGGTTTGTTCAGAAAAGCAAGCGAACTTTGCGTTTTATGTGACGTTCATGCCATCATTGTGTTTTCTTCCGCTGACAAACTATATTGTTTCGGTCAACCAAATACCGACACAATCATCAATAGCTATGTAAGAGGTATCACCGAGTTTGAGGATTTAAATGATCAACTTGAGCAATTTATGGTTTCCATTTATGAATTAAGGAGGAAGCAAATTGAAAGGGATGATGAACAACATGCGATGATGCTTAACATGTAG 363 0.3719 MNMDNQRKESTWRKKIEIKKLDKQANKQVTFSKRRQGLFRKASELCVLCDVHAIIVFSSADKLYCFGQPNTDTIINSYVRGITEFEDLNDQLEQFMVSIYELRRKQIERDDEQHAMMLNM 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04643 120 PRINTS MADS domain signature 33 48 IPR002100 GO:0003677|GO:0046983
Trre8g04643 120 PRINTS MADS domain signature 13 33 IPR002100 GO:0003677|GO:0046983
Trre8g04643 120 PANTHER MADS BOX PROTEIN 13 101 - -
Trre8g04643 120 Gene3D - 24 91 IPR036879 GO:0003677|GO:0046983
Trre8g04643 120 SUPERFAMILY SRF-like 13 80 IPR036879 GO:0003677|GO:0046983
Trre8g04643 120 ProSiteProfiles MADS-box domain profile. 11 70 IPR002100 GO:0003677|GO:0046983
Trre8g04643 120 SMART madsneu2 11 69 IPR002100 GO:0003677|GO:0046983
Trre8g04643 120 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 22 66 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04643 Trre-Chr8 50200943 50201465 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04643 8 114 Type I MADS-box Gene Family AT5G60440 43.636 1.15e-22 88.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trre8g04643 SRF-TF 4.1e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04643 - - cam:101502875 134.42