Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04635 ATGACCAAACGTTTCAAGAATAAGTTGGGTGAAGGAGGCTATGGTTCTGTCTATGAAGGAGAGCTTCGAAGCAAACGCAAAGTAGCTGTTAAGGTATTGACTAAGTCCCAAACCAATGGTCAAGACTTCATCAACGAAGTTGCAACCATTGGAAGAATTCGTCATGTCAATGTGGTGCAGCTGATTGGATTTTGTGCCGAAAGAACAAAGCAAGCTCTGATCTATGAGTTCATGTCTAATGGTTCTCTTGATAAACACACATTTTCACAAGACCAAGGCAACTCATCCTCATTAAGCTACGAGAAATTCTATGATATTTCTCTTGGAATCGCTCGTGGAATTCAATACTTACATCAAGGTTGTGACATGCAAATCATACATTTTGATATAAAACCTCATAACATTCTTCTTGATGAGAATTTCAACCCGAAAATATCTGACTTTGGTTTGGCAAAGTTGTACCGAATAGATCAAAGCATTTTGACTTTAACAGCAGCGAGAGGAACAATGGGGTACATGGCTCCTGAGTTGTTGTACAAGAACATCGGAAGCATATCTAACAAAGCTGATGTTTATAGTTTTGGAATGATGCTAATGGAAATGGCAGGTAGAAAAAAGAACATAAATTATATGGAGAATTATTGGCAAGACTACTTTGCTAAATGGGCTTATGATCAATTTGAGGAAACAATAGATACAAACAATGGAACAGAGGAGGAAAAGAAAATTGCAATGAAGATGATTGTGATTGCGTTGAAATGCATACAAATGAAACCAGATGATCGTTCCTCAATCAATGAAGTGATAGATATGCTCGAAGGAGATGAAGTGCCTCAACACCTTCCACCTGATCCTGAATCTCTAATAACCTGGCAAAGGATATCAGCAGATGCAAATGAATTTGATGATAACGGATAA 918 0.378 MTKRFKNKLGEGGYGSVYEGELRSKRKVAVKVLTKSQTNGQDFINEVATIGRIRHVNVVQLIGFCAERTKQALIYEFMSNGSLDKHTFSQDQGNSSSLSYEKFYDISLGIARGIQYLHQGCDMQIIHFDIKPHNILLDENFNPKISDFGLAKLYRIDQSILTLTAARGTMGYMAPELLYKNIGSISNKADVYSFGMMLMEMAGRKKNINYMENYWQDYFAKWAYDQFEETIDTNNGTEEEKKIAMKMIVIALKCIQMKPDDRSSINEVIDMLEGDEVPQHLPPDPESLITWQRISADANEFDDNG 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04635 305 FunFam serine/threonine-protein kinase PBS1-like 1 77 - -
Trre8g04635 305 Pfam Protein kinase domain 6 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g04635 305 SUPERFAMILY Protein kinase-like (PK-like) 5 273 IPR011009 -
Trre8g04635 305 PIRSF ILK 3 280 - -
Trre8g04635 305 ProSitePatterns Protein kinases ATP-binding region signature. 9 31 IPR017441 GO:0005524
Trre8g04635 305 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 285 IPR045874 GO:0004672
Trre8g04635 305 Gene3D Transferase(Phosphotransferase) domain 1 82 280 - -
Trre8g04635 305 ProSiteProfiles Protein kinase domain profile. 3 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g04635 305 SMART serkin_6 3 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g04635 305 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Trre8g04635 305 FunFam PR5-like receptor kinase 78 282 - -
Trre8g04635 305 Gene3D Phosphorylase Kinase; domain 1 3 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04635 Trre-Chr8 50167933 50168850 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04635 1 285 Receptor kinase-like Gene Family AT5G38280 50.340 4.38e-98 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Trre8g04635 Pkinase 3.3e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04635 - - tpra:123914142 566.229