Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04627 ATGGCTTCTCCTGGTGGAACATATTCTTCTGGTACAAGTTCTCTTCAAAATTCTGGATCTGGATCAGAGGATCTGCGGTTGAATATAACAGATCAAAAGAAAAGGAAGAGAATGCAATCAAATCGAGAATCAGCAAGAAGATCAAGGATGAAGAAACAGCAACACATGGAAGATCTTAGCAATCAAATTGAACAGTTGAAAAAAGAGAATAATCAAATAAGCACAAATGTTGGTGTAACTACTCAGATGTACCTGAACGTTGAATCTGAGAATGAAATTCTTAGGGTTCAAATGGCTGAATTGAGTAACAGATTGCAATCTCTTAATGATATTATTCATTGCATTGAATCAAGTAATTCAATGTTTCAAGAGACTGATCAATTGTTCAATGATTGTGGATTTTTGGTGGACAATTGGAACACTTTTCCTGTTAATCAACCAATTATGGCATCTAATGACATGTTGATGTATTGA 474 0.346 MASPGGTYSSGTSSLQNSGSGSEDLRLNITDQKKRKRMQSNRESARRSRMKKQQHMEDLSNQIEQLKKENNQISTNVGVTTQMYLNVESENEILRVQMAELSNRLQSLNDIIHCIESSNSMFQETDQLFNDCGFLVDNWNTFPVNQPIMASNDMLMY 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04627 157 MobiDBLite consensus disorder prediction 27 64 - -
Trre8g04627 157 Coils Coil 84 111 - -
Trre8g04627 157 Gene3D - 31 87 - -
Trre8g04627 157 SMART brlzneu 29 93 IPR004827 GO:0003700|GO:0006355
Trre8g04627 157 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 36 51 IPR004827 GO:0003700|GO:0006355
Trre8g04627 157 PANTHER BZIP TRANSCRIPTION FACTOR 44 10 153 - -
Trre8g04627 157 Pfam bZIP transcription factor 33 91 IPR004827 GO:0003700|GO:0006355
Trre8g04627 157 FunFam BZIP transcription factor 31 82 - -
Trre8g04627 157 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 31 77 IPR004827 GO:0003700|GO:0006355
Trre8g04627 157 CDD bZIP_plant_GBF1 34 84 IPR045314 GO:0003700|GO:0006355
Trre8g04627 157 MobiDBLite consensus disorder prediction 1 26 - -
Trre8g04627 157 SUPERFAMILY Leucine zipper domain 33 86 IPR046347 GO:0003700|GO:0006355
Trre8g04627 157 Coils Coil 42 76 - -
Trre8g04627 157 MobiDBLite consensus disorder prediction 1 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04627 Trre-Chr8 50125172 50125645 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04627 29 157 bZIP Transcription Factor Family AT4G34590 53.285 3.17e-39 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Trre8g04627 bZIP_2 1.5e-11 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04627 K25786 - gmx:778139 164.851