Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04623 ATGGTTATGGAACATAATAAACAAAAGAGCAACGAAGACAAACACATAGACAAACTGGCAATGAAGAATAAGTCCAAGTTTGTTGGAGTGAGACAAAGGGCATCAGGGAAATGGGCAGCAGAGATTAAAGACACATCGAAGAACATTAGGATGTGGCTTGGTACATATAAAACTGCCGAAGAAGCTGCCCGAGCTTATGATGAAGCGGCTTGTCTTCTTCGAGGTTCAAACACTCGCACCAATTTCTCTACAGCTCATTTCATTCCGTCCAATTCTCCTATATCTCTCAAACTCAAAAATCTCCTCCATCGAAAATCAATCTCAAATCAAAGTCAAAACAAGTCCACTATGATTAGTTCCTGTTTTCAAAGTGCTCCTATTGATAATAGCATCATGGTAATGGAAAATGAAAACAACTCTTCTTGTAGTAGTGAAGAGTCAAAGTCTTTGTTTTGGGTTCAAAATAAAGCATCTGAATATAACCCTTATTATGGGGTTGATATGAATATGATGAACTATTCATTGGGCATTACACCAAATACATTGCAGTTTGATTATTCTTGGCCATTATCTCAACAAAGGATTAACGAGTGCACAACACCAAAAGATAATATGAATGTATATGGCATGAATGAGTGCTATGTGGAGGATACATATGAATCAATGTATGAATATGATGTCAATTATCCTCTTTCCCACTTGTTCTGCTTCACTTGA 717 0.3696 MVMEHNKQKSNEDKHIDKLAMKNKSKFVGVRQRASGKWAAEIKDTSKNIRMWLGTYKTAEEAARAYDEAACLLRGSNTRTNFSTAHFIPSNSPISLKLKNLLHRKSISNQSQNKSTMISSCFQSAPIDNSIMVMENENNSSCSSEESKSLFWVQNKASEYNPYYGVDMNMMNYSLGITPNTLQFDYSWPLSQQRINECTTPKDNMNVYGMNECYVEDTYESMYEYDVNYPLSHLFCFT 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04623 238 Pfam AP2 domain 25 75 IPR001471 GO:0003700|GO:0006355
Trre8g04623 238 FunFam ethylene-responsive transcription factor RAP2-11 25 84 - -
Trre8g04623 238 ProSiteProfiles AP2/ERF domain profile. 26 83 IPR001471 GO:0003700|GO:0006355
Trre8g04623 238 CDD AP2 25 82 IPR001471 GO:0003700|GO:0006355
Trre8g04623 238 SUPERFAMILY DNA-binding domain 25 84 IPR016177 GO:0003677
Trre8g04623 238 SMART rav1_2 26 90 IPR001471 GO:0003700|GO:0006355
Trre8g04623 238 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 12 135 - -
Trre8g04623 238 Gene3D AP2/ERF domain 25 85 IPR036955 GO:0003700|GO:0006355
Trre8g04623 238 PRINTS Ethylene responsive element binding protein signature 49 65 IPR001471 GO:0003700|GO:0006355
Trre8g04623 238 PRINTS Ethylene responsive element binding protein signature 27 38 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04623 Trre-Chr8 50084407 50085123 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04623 3 103 AP2-EREBP Transcription Factor Family AT5G19790 68.269 2.87e-40 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Trre8g04623 AP2 8.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04623 K09286 - gmx:100803832 272.322