Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04609 ATGGCTGTGCCGATCCTCACAAAGAAGATCGTAAAGAAGAGGGTCAAGCAATTCAAAAGACCCCAAAGCGATCGCAAGATCTGTGTAAAGGAAAATTGGCGCAGACCAAAGGGTATAGATTCTCGTGTTAGGAGAAAGTTTAAAGGATGCACTTTGATGCCTAATATTGGTTATGGGTCAGATAAGAAGACTAGACATTATCTTCCAAATGGTTTCAAGAAATTTCTTGTTAGTAATGTTAATGATTTGGAGTTGCTTATGATGCACAATAGGACTTATTGTGCTGAGATTGCACACAATGTATCTACAAGAAAGAGGAAGGACATAGTTGATAGAGCGGCACAACTTGATGTTGTTGTAACAAACAAATTAGCTAGACTAAGAAGCCAAGAGGATGAATAA 402 0.3831 MAVPILTKKIVKKRVKQFKRPQSDRKICVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFLVSNVNDLELLMMHNRTYCAEIAHNVSTRKRKDIVDRAAQLDVVVTNKLARLRSQEDE 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04609 133 CDD Ribosomal_L32_L32e 16 122 IPR001515 GO:0003735|GO:0005840|GO:0006412
Trre8g04609 133 PANTHER 60S RIBOSOMAL PROTEIN L32 AND DNA-DIRECTED RNA POLYMERASE II, SUBUNIT N 1 133 IPR001515 GO:0003735|GO:0005840|GO:0006412
Trre8g04609 133 SUPERFAMILY Ribosomal protein L32e 2 131 IPR036351 -
Trre8g04609 133 SMART Ribosomal_L32e_2 15 122 IPR001515 GO:0003735|GO:0005840|GO:0006412
Trre8g04609 133 Pfam Ribosomal protein L32 16 122 IPR001515 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04609 Trre-Chr8 49962952 49964217 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04609 1 133 Cytoplasmic Ribosomal Protein Gene Family AT4G18100 84.211 4.05e-84 240
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04609 K02912 - egr:104456499 250.366