Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04598 ATGGAGAAGATTTCAGTCCCAGAAATGGGAGGCATCAAAGGGTGTGATGTCTTGTGTTTCACAAGAAGGGGTAAGTTTACCTTTGCTTCATCGGTTCCAGAAGTGCAACTTTCGCAGTATGTCCCTGCACTTGAAAAGTTAGCTACCTTGAGGTTACTACAACAGGTTTCTAATATGTACCAAACAATGAAGATTGATAACCTTGCTGGGTTGATCCCTTTCTTTGATTTTTCCGTTGTGGAAAAGATTCCTGTGGATGCTATTAAGCTGAAATTTCTATCAATGAAAGTCGACCACATGAAAAATGTTGTTATTTTCTGTAACACGAGTCTTGAGGATGATGGCCTGAAGGATCACTTGGCTAGTTTTGCTGAACAATTTTAA 384 0.3958 MEKISVPEMGGIKGCDVLCFTRRGKFTFASSVPEVQLSQYVPALEKLATLRLLQQVSNMYQTMKIDNLAGLIPFFDFSVVEKIPVDAIKLKFLSMKVDHMKNVVIFCNTSLEDDGLKDHLASFAEQF 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04598 127 Gene3D - 23 93 - -
Trre8g04598 127 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3, THETA SUBUNIT 28 126 IPR027512 GO:0005852
Trre8g04598 127 Pfam PCI domain 31 106 IPR000717 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04598 Trre-Chr8 49909166 49910295 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04598 24 127 Eukaryotic Initiation Factors Gene Family AT4G11420 68.269 3.85e-43 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04598 K03254 - gmx:100803796 162.925