Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04569 ATGGCCGGGGTTTCGCTCCAGTGCGGTGATTGTGGCGCTCTGTTGAAATCAGTAGAAGAAGCTCAAGAACACGCTGAACTCACTTCACACTCCAATTTCTCTGAATCCACAGAACCCGTTCTCAATCTCGTCTGCACCACTTGCTCCAAACCCTGCCGATCCAAAACCGAGAGTGATTTACACACTAAAAGAACAGGGCACACTGAGTTTGTTGATAAGACTTCGGAAGCAGCAAAACCAATAAGTTTAGAGGTTCCTAAGGGGGATTCAGAATCACAAGAGGGTGGAACTAGTGATCAAAATGAAGAATTGGTTGTTCCTGAAGTTGATAAGAAGTTGCTTGAGGAACTTGAATCAATGGGCTTTTCTACAGCTCGAGCAACACGGGCGCTTCACTTTTCTGGTAATGCTAGCCTCGAGGCTGCCGTAACTTGGATAGAAAACCATGAGAATACGCCTGACATAGATGAGATGCCCTTGGTACCTGCTGTCAGTAAAGCTAAAGCTTCCAAACCCTCTCTTACCCCAGAAGAAACAAATGCCATACTAAAGGAACTAAGGGAGAAAGCTCGTAAGAAGAAAGAAGAAGAAGAGAAGAGAATGGAGAGAGAAAGAGAAAAGGAGAGAATTCGAGTTGGCAAGGAGTTGCTTGAAGCAAAGAGGATCGAAGAAGACAATGAGAGAAAAAGGTTGTTAGCTTTGAGAAAAGCAGAGAAAGAGGAAGAGAGAAGGGCTAGAGAGAAAATCAAGCAAAAGTTGGAAGAAGACAAGGCGGAAAGAAGGCGAAAACTTGGATTGGCTCCAGTGGAGCCTTCAACAGCCAAACCTTCAACTGTTGTTGAGGAGAAAAAGAGTTTCCTGCCAATTAGACCTGCCACAAAAACCGAGCGAATGAGAGAGTGCTTGCGTTCTCTAAAGCAGAACCATAAGGAGGATGATGCCAGAGTGAAGAAAGCATTCCAAACTCTTCTAACTTATGTGGGGAATGTTGCCAGAAATCCCGATGAAGAAAAATTCAGGAAGATTCGTCTTAGTAACGCAGCGTTTCAGGAAAGAGTTGGTGCTTTGAAGGGAGGCATTGAATTCCTTGAAATTTGTGGGTTTGAGAAGATTGATGGTGGTGAAGTTTTGTTTTTGCCTAGGGACAAGGTTGAGATTGCAGTCCTGAATTCAGCTGGATCGGAACTAGACTCTGCAATAAAGAATCCCTTTTTTGGAGTTCTTTAG 1227 0.4409 MAGVSLQCGDCGALLKSVEEAQEHAELTSHSNFSESTEPVLNLVCTTCSKPCRSKTESDLHTKRTGHTEFVDKTSEAAKPISLEVPKGDSESQEGGTSDQNEELVVPEVDKKLLEELESMGFSTARATRALHFSGNASLEAAVTWIENHENTPDIDEMPLVPAVSKAKASKPSLTPEETNAILKELREKARKKKEEEEKRMEREREKERIRVGKELLEAKRIEEDNERKRLLALRKAEKEEERRAREKIKQKLEEDKAERRRKLGLAPVEPSTAKPSTVVEEKKSFLPIRPATKTERMRECLRSLKQNHKEDDARVKKAFQTLLTYVGNVARNPDEEKFRKIRLSNAAFQERVGALKGGIEFLEICGFEKIDGGEVLFLPRDKVEIAVLNSAGSELDSAIKNPFFGVL 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04569 408 SUPERFAMILY PUG domain-like 291 404 IPR036339 -
Trre8g04569 408 Gene3D - 300 398 - -
Trre8g04569 408 Coils Coil 222 259 - -
Trre8g04569 408 CDD UBA_PUB_plant 108 156 - -
Trre8g04569 408 Gene3D - 86 164 - -
Trre8g04569 408 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 108 149 IPR015940 -
Trre8g04569 408 SMART PGNneu 318 381 - -
Trre8g04569 408 CDD PUB_UBA_plant 302 408 - -
Trre8g04569 408 ProSitePatterns Zinc finger C2H2 type domain signature. 8 30 IPR013087 -
Trre8g04569 408 SMART uba_6 110 148 IPR015940 -
Trre8g04569 408 MobiDBLite consensus disorder prediction 253 282 - -
Trre8g04569 408 Coils Coil 179 211 - -
Trre8g04569 408 Pfam PUB domain 315 385 IPR018997 -
Trre8g04569 408 Pfam UBA/TS-N domain 114 146 IPR015940 -
Trre8g04569 408 MobiDBLite consensus disorder prediction 73 103 - -
Trre8g04569 408 PANTHER F13M7.16 PROTEIN 1 408 - -
Trre8g04569 408 SUPERFAMILY UBA-like 88 162 IPR009060 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04569 Trre-Chr8 49647837 49652279 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04569 96 408 C2H2 Transcription Factor Family AT1G04850 75.949 1.34e-141 405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04569 K24348 - gmx:100794687 607.446