Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04550 ATGGCTGATCGGAGTTTGGCTATTGTGAAACCGGTATGGATGAAACAAGCTGAGGAAGCGAAGATTAAGAGTGAGGCTGAGAAAGATGCGGCAGCTAAAGCTGCTTTTGAAGCGACTTTTAAGGGTTTGGTGAAAAGTCACGAGAAGAGAGCTGCTAATTCGGATAGTGATTCGGATGAATATGAGGATTTGGCTCATAAGCCCATTGGGCCTGTTGATCCTTCCAAGTGCACTGCTGCTGGCACTGGAATTGCCGGAGGAACTGCCTGTGCGGCTTCTTCGTTCTCTGTGGTTACTAAGGATGCTGATGAGAGGAAGGTTTCGACTGGTGGTGCGCAAATTAAGGTGAAAGTGACGCCCGGTTTGGGTGTTGGAGGGTCTGATCAAGAAGGGATTGTGAAGGATATGGGTGATGGGACTTATACTGTTACTTATGTGGTGCCTAAGAGAGGGAATTATATGGTCAATGTTGAATGCAATGGCAGGCCAATCAATGGGAGTCCTTTCCCTGTGTTTTTTAGTGCAGGCAATAGTAACGGAGGGCTGCTGGGTTTACCTCCTGCATCTTCATATCCAAATATGGTTAATCAAACTATGCCCAACATGCCAAATTACTCTGGCTCTGTCTCAGGGGCATTCCCAGGATTGTTGGGAATGATTCCAGGAATTATTGCTGGAACTTCTGGGGGTGCTATTTTGCCAGGAATTGGGGCCACACTAGGGGAAGTCTGTCGCGATTACTTGAATGGGCGCTGTGCAAAAGTTGATTGTACTTTGAATCACCCACCTCATAATTTGCTCATGACAGCCTTAGCTGCCACAACTTCAATGGGATCACTTAACCAGGCTCCTATGGCACCTTCTGCTGCTGCAATGGCTGCCGCTCAGGCAATAGTTGCTGCCCAAGCCCTTCAAGCTCATGCAGCTCAGGTGCAAGCTCAGTCAGCAAAAGATTCCGCAGGTTCACCTGATAAAGCCAATAAGGAGGACGTGTTGAAGAAAACTCTTCAAGTTAGCAATCTTAGCCCACTTCTCACTGTGGAACAGCTAAAACAACTCTTTGGTTTCTGTGGCACTGTTGTTGAATGTACAATCACTGATTCAAAGCATTTTGCTTATATAGAATACTCAAAACCTGAAGAAGCAACTGCTGCTATGGCATTGAACAACATTGATGTTGGGGGGCGTCCTTTGAACGTTGAAATGGCTAAATCACTTCCGCCAAAACCAACTACGAATTCTTCACATGCTTCATCCTCTCTTCCTTTGATGATGCAGCAAGCTGTTGCCATGCAACAGATGCAATTCCAGCAAGCACTGATTATGCAACAAACTATGACGGCACAGCAGGCTGCTAACCGAGCTGCAACCATGAAATCTGCCACGGATTTAGCAGCAGCACGGGCTTTAGAAATAAGTAAGAAATTGAATCCTGATGGACTTGACAATGAAGAAAAAGAGACGAAACAGAAATCCAGGTCACCTTCTCCCCCTCCTGAAAGAGCACGATCAAAGTCAAGATCTCCTATCAGTTACAGGAGGAGGAAGTCCCGTTCATACTCACCTGCCCGCCATTCTAAAGTTCGTCGGTCCCGTTCACCATTGAGGTTCCATCATCATCCGAGGTATGAAAGGGACTGGAGGTCCTATAGAGACAACAGGGAACATAGTGATAGGTTCAGACGACGAGATTCAGATAGATTTCTTGATAATCATTCATCTGGTTCGAGAAGAAACAGAAGTAGGAGTGTGAGCCCTCGTTCAAGGAGATCCCCTGTTTCTCCAAAACGTCACGGAGGAAGTTCATCTCATAGAGGAAGGAAACAGTCTCGTGCTGATTCTGGTTCTCCAAGTAATCGCAGAGGAAGTAGGTCTTCTCCAAAGATTGATGAGAAGAAATTAAAAAGCAGAAGGCGCTCGAGGTCAAGATCTTCAGATGATAAGCTTAACCTCTCAGACAAAAACGAAGAAATTTTGCATGAAAAGGCCAAACAAAGAGAGCGAAGGCGGTCCAGGTCAGTATCTGTGGATGAGAAATCTCACAGGAGCCGATCTTCCCCAAGAAAGGTGGCTGAAAGCAGACCCAGGCACAGGAAGCGGTCTAGGTCCAAATCTGTCGACAATAAGCATCACTTTTCTGACAAGCTGGATGAAAACAAAAATAGGAGATCAAGGCATAGTGATAAAAGACACTCCAGATCAAGATCTTCGGAAAATAGGGACCGGACTGATGTCAGAGAGGATGGAAGCAAACATGGAAAGTCGAAATATCATGATAAAAAAGGTAACAGGTCAGAGTCTGATGAAGGGAAGCACCATTCTAAAGGTAAATCTGGTGAAAATAGAGATAAGAAGTCAAAGCATCGTGATAGAAGTGATAGAAGGCGTTCCAGGTCAATATCATCAGAAAGTAAGCATGACAAAGGAGGCACTTCATCACATAGAGACGAGAACAATTTTGAACACAAAAGATTCAGGTCAAAATCTCCTAATGCCAAGCATCACTGCGACGATGATTATGAAAATAAAGATGAAAGATCAGAGCATCAAGAGAAATCCTTGTCTAAATTGAAATTGGAAAATCGTCAGCAATATGATGGGAGTGATTCTTCCCCTAGAAATTTCAAGCAGTATGAATCAAAAGGGAAAAGAAAATTTGATTCTGGATCTGCAGAAGTTAAGCATCATTTGAATGATGGAGAAAATGGTACCAGCGATGAAAATTCAAAACATCTTGATAAGGCCACGCAGGAACCAATTTTGCATGTGCAGGACTTATCAAGCCTGAATGGTAATGGGATATTGATTTCTGAGAATGAGAATACAAAGTTAGATGGGTGGACTGAAAATGCCGGAGCTGATGATAACCCAGGGTGGAAATGTGTAGATGAAGTGGGAAGTGGGAAATGTTAA 2913 0.4428 MADRSLAIVKPVWMKQAEEAKIKSEAEKDAAAKAAFEATFKGLVKSHEKRAANSDSDSDEYEDLAHKPIGPVDPSKCTAAGTGIAGGTACAASSFSVVTKDADERKVSTGGAQIKVKVTPGLGVGGSDQEGIVKDMGDGTYTVTYVVPKRGNYMVNVECNGRPINGSPFPVFFSAGNSNGGLLGLPPASSYPNMVNQTMPNMPNYSGSVSGAFPGLLGMIPGIIAGTSGGAILPGIGATLGEVCRDYLNGRCAKVDCTLNHPPHNLLMTALAATTSMGSLNQAPMAPSAAAMAAAQAIVAAQALQAHAAQVQAQSAKDSAGSPDKANKEDVLKKTLQVSNLSPLLTVEQLKQLFGFCGTVVECTITDSKHFAYIEYSKPEEATAAMALNNIDVGGRPLNVEMAKSLPPKPTTNSSHASSSLPLMMQQAVAMQQMQFQQALIMQQTMTAQQAANRAATMKSATDLAAARALEISKKLNPDGLDNEEKETKQKSRSPSPPPERARSKSRSPISYRRRKSRSYSPARHSKVRRSRSPLRFHHHPRYERDWRSYRDNREHSDRFRRRDSDRFLDNHSSGSRRNRSRSVSPRSRRSPVSPKRHGGSSSHRGRKQSRADSGSPSNRRGSRSSPKIDEKKLKSRRRSRSRSSDDKLNLSDKNEEILHEKAKQRERRRSRSVSVDEKSHRSRSSPRKVAESRPRHRKRSRSKSVDNKHHFSDKLDENKNRRSRHSDKRHSRSRSSENRDRTDVREDGSKHGKSKYHDKKGNRSESDEGKHHSKGKSGENRDKKSKHRDRSDRRRSRSISSESKHDKGGTSSHRDENNFEHKRFRSKSPNAKHHCDDDYENKDERSEHQEKSLSKLKLENRQQYDGSDSSPRNFKQYESKGKRKFDSGSAEVKHHLNDGENGTSDENSKHLDKATQEPILHVQDLSSLNGNGILISENENTKLDGWTENAGADDNPGWKCVDEVGSGKC 970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04550 970 Gene3D Immunoglobulins 71 178 IPR013783 -
Trre8g04550 970 MobiDBLite consensus disorder prediction 578 598 - -
Trre8g04550 970 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 280 661 - -
Trre8g04550 970 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 338 398 IPR000504 GO:0003723
Trre8g04550 970 SMART rrm1_1 335 401 IPR000504 GO:0003723
Trre8g04550 970 MobiDBLite consensus disorder prediction 707 724 - -
Trre8g04550 970 MobiDBLite consensus disorder prediction 731 787 - -
Trre8g04550 970 MobiDBLite consensus disorder prediction 566 919 - -
Trre8g04550 970 SUPERFAMILY E set domains 71 171 IPR014756 -
Trre8g04550 970 ProSiteProfiles Filamin/ABP280 repeat profile. 69 173 IPR017868 -
Trre8g04550 970 MobiDBLite consensus disorder prediction 475 500 - -
Trre8g04550 970 ProSiteProfiles Zinc finger C3H1-type profile. 243 264 IPR000571 GO:0046872
Trre8g04550 970 MobiDBLite consensus disorder prediction 640 690 - -
Trre8g04550 970 Pfam Filamin/ABP280 repeat 71 169 IPR017868 -
Trre8g04550 970 MobiDBLite consensus disorder prediction 46 68 - -
Trre8g04550 970 MobiDBLite consensus disorder prediction 876 918 - -
Trre8g04550 970 MobiDBLite consensus disorder prediction 691 706 - -
Trre8g04550 970 Coils Coil 840 860 - -
Trre8g04550 970 SUPERFAMILY RNA-binding domain, RBD 321 413 IPR035979 GO:0003676
Trre8g04550 970 CDD RRM_SF 336 401 - -
Trre8g04550 970 Gene3D - 294 418 IPR012677 -
Trre8g04550 970 MobiDBLite consensus disorder prediction 508 537 - -
Trre8g04550 970 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 334 405 IPR000504 GO:0003723
Trre8g04550 970 MobiDBLite consensus disorder prediction 795 863 - -
Trre8g04550 970 MobiDBLite consensus disorder prediction 475 537 - -
Trre8g04550 970 Coils Coil 14 34 - -
Trre8g04550 970 SMART flmn_3 73 176 IPR001298 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04550 Trre-Chr8 49512240 49517343 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04550 321 404 Eukaryotic Initiation Factors Gene Family AT2G23350 35.556 8.43e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04550 - - tpra:123914208 1142.1