Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04547 ATGCGTTGTTACGGCTTAACACTCCCCGGAAGCGATAATCGCTTCTTCATTCCAACACTAACTCCATCACTATCCTTCAAACCCAAACCCATAACCCGAATTTCATTCGGGTCTAAACTCAAAGCCACTTTCAACGACGGCGCTGTGGCGGACCAACTCAGTTTCTATGATCTTCTCGGTATACCCGAATCCGGTTCATTAATGGATATCAAAAGCGCTTATAAACAACTTGCAAGAAAGTATCATCCCGATGTTTCTCCACCGGGTCGGGTCGAAGAGTATACAAAGAGGTTTATTCAGGTACAGGAAGCGTACGAAACTTTGTCTGATCCTTCAAGGAGAATTATGTATGATAGAGATATGGCTAGAGGGATTCATCTTGCTTTCAATGCTCGTAAACGCTATAATCATTCTGATCAGGTGAGTGAACAAAAAGGCGAATGGAAATCTCGTTGGCAATCTCAACTCTCTGGTTTGAAGAGAAGAAGCGAGAGCAAGGATGGTGCTGAGAACATGTCATGGGCTGCTCGAATGCGCCAGCAGAGGGAGGAATTGTGA 558 0.448 MRCYGLTLPGSDNRFFIPTLTPSLSFKPKPITRISFGSKLKATFNDGAVADQLSFYDLLGIPESGSLMDIKSAYKQLARKYHPDVSPPGRVEEYTKRFIQVQEAYETLSDPSRRIMYDRDMARGIHLAFNARKRYNHSDQVSEQKGEWKSRWQSQLSGLKRRSESKDGAENMSWAARMRQQREEL 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04547 185 ProSiteProfiles dnaJ domain profile. 54 121 IPR001623 -
Trre8g04547 185 SUPERFAMILY Chaperone J-domain 51 125 IPR036869 -
Trre8g04547 185 PANTHER CHAPERONE PROTEIN DNAJ 20 CHLOROPLASTIC 50 184 - -
Trre8g04547 185 Gene3D DnaJ domain 41 157 IPR036869 -
Trre8g04547 185 PRINTS DnaJ domain signature 56 74 IPR001623 -
Trre8g04547 185 PRINTS DnaJ domain signature 93 113 IPR001623 -
Trre8g04547 185 PRINTS DnaJ domain signature 74 89 IPR001623 -
Trre8g04547 185 ProSitePatterns Nt-dnaJ domain signature. 98 117 IPR018253 -
Trre8g04547 185 SMART dnaj_3 53 113 IPR001623 -
Trre8g04547 185 CDD DnaJ 55 110 IPR001623 -
Trre8g04547 185 FunFam Chaperone protein dnaJ 20, chloroplastic 42 150 - -
Trre8g04547 185 Pfam DnaJ domain 55 118 IPR001623 -
Trre8g04547 185 MobiDBLite consensus disorder prediction 156 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04547 Trre-Chr8 49501829 49505385 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04547 50 118 C2H2 Transcription Factor Family AT1G74250 38.889 1.19e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04547 - - gmx:100101903 268.085