Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04537 ATGGGTCGTCGTAAAATTGCGATTGAGTTGGTGAAAGACTCCAATGTGAGGCAGGTCACATTCTCAAAGCGTCGAACAGGATTATTCAAAAAAGCAAATGAATTATCTATTTTGAGTGGAGCAGAAGTAGTTATTGTCATGTTTTTTCCGGGGAATAAACCATACTCTTTTGGTCACCCAAGAGTTGATGTTGTTGTGGCCAAGTATCTTCAACAAGATCTTGAACCCAGTGATTCCGAAGGAGACTCCTCTTCTGATGCTTCCAATATGAACGAGTTGAATTTGGAACTTGCTGATGTGATGGCTGAAATTCATGAAAGTGAAAAGCAGATTGAGATGTATGATGAGATACTGAAGCAAAATGACATGACATCACTATCTGACCTTGAAAAATTGAGAGATTTATACAAAGAGCTTCAAGATTGGGTAAAATTGAGTCTCAATGATCTCAAGATATCAGAATATTTGTTGCTTCTTGCTAAGGAACCGGTGGTAGGGGTTAAAGTGAAATCTGCAAAAAGGAATAGAAGAAAAAATTGA 540 0.3778 MGRRKIAIELVKDSNVRQVTFSKRRTGLFKKANELSILSGAEVVIVMFFPGNKPYSFGHPRVDVVVAKYLQQDLEPSDSEGDSSSDASNMNELNLELADVMAEIHESEKQIEMYDEILKQNDMTSLSDLEKLRDLYKELQDWVKLSLNDLKISEYLLLLAKEPVVGVKVKSAKRNRRKN 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04537 179 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 57 IPR002100 GO:0003677|GO:0046983
Trre8g04537 179 SUPERFAMILY SRF-like 1 72 IPR036879 GO:0003677|GO:0046983
Trre8g04537 179 FunFam Agamous-like MADS-box protein AGL62 13 79 - -
Trre8g04537 179 CDD MADS 2 60 - -
Trre8g04537 179 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Trre8g04537 179 PANTHER MADS BOX PROTEIN 3 139 - -
Trre8g04537 179 Coils Coil 90 110 - -
Trre8g04537 179 Gene3D - 14 81 IPR036879 GO:0003677|GO:0046983
Trre8g04537 179 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Trre8g04537 179 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Trre8g04537 179 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Trre8g04537 179 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04537 Trre-Chr8 49392758 49393297 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04537 1 161 Type I MADS-box Gene Family AT2G34440 39.766 1.18e-31 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trre8g04537 SRF-TF 6.2e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04537 - - mtr:11439559 217.238