Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04536 ATGGGTCGTCGCCGTATTGAGATTGAGTCGGTGAAAGACCCCAACACAAGGCGGGTCACATTCTCAAAGCGTCGAACTGGCTTATTCAAAAAAGCAAATGAATTGTCTATTTTGTGTGGAGCAGAAGTCGCTATTGTCCTGTTTTCTCCAGGAAATAAGCCTTATTCTTTTGGTCACCCAGAAGTTGATGTTGTTGCAGCCAAATATCTTCAACCAGATGCTGAACCAAGTGACCTTGAAGGAGACCCCTCTTCTGATGCTTCCAACATGGACGAGTTGAATCTAGAACTTGCTGAGGTGTTGGCCCAAATTCGTGAAGGTGAAAAGCAGGCTGAGACTTATGATGAGATCCTGAAGCAAAATGATGTGACAACACTCTCCGACCTTGAAGAATTGAGAGATTCATATAAAGAATTTCAAGACGGGGTAAAATTGCATCTTAGTGATCTCGAAATATCAGAATGTATGATGCTTCTTGCTAAGGAGCCGGTGGTGGGGGTAAAAGCGTAA 510 0.4353 MGRRRIEIESVKDPNTRRVTFSKRRTGLFKKANELSILCGAEVAIVLFSPGNKPYSFGHPEVDVVAAKYLQPDAEPSDLEGDPSSDASNMDELNLELAEVLAQIREGEKQAETYDEILKQNDVTTLSDLEELRDSYKEFQDGVKLHLSDLEISECMMLLAKEPVVGVKA 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04536 169 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Trre8g04536 169 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Trre8g04536 169 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Trre8g04536 169 FunFam Agamous-like MADS-box protein AGL62 13 78 - -
Trre8g04536 169 PANTHER MADS BOX PROTEIN 3 143 - -
Trre8g04536 169 CDD MADS 2 60 - -
Trre8g04536 169 Gene3D - 14 80 IPR036879 GO:0003677|GO:0046983
Trre8g04536 169 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 57 IPR002100 GO:0003677|GO:0046983
Trre8g04536 169 Coils Coil 90 110 - -
Trre8g04536 169 SUPERFAMILY SRF-like 1 72 IPR036879 GO:0003677|GO:0046983
Trre8g04536 169 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Trre8g04536 169 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04536 Trre-Chr8 49388558 49389067 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04536 1 162 Type I MADS-box Gene Family AT2G34440 42.442 2.62e-37 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trre8g04536 SRF-TF 2.3e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04536 - - mtr:11439559 241.891