Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04535 ATGGAAACTGCTCCGCTCTCATCGGCCACCGCTGCCGGAAACGGAGGAGGTCCGGCGCCGTTTCTTCAGAAAACATATGACATGGTGAACGATCACAGCACAGATGAGATCGTTTCGTGGAGCTCTACCAATAACAGTTTCATCGTTTGGAATCCTCCTGAATTCGCTTGCGTTCTTCTTCCAACCTATTTCAAGCATAACAATTTCTCCAGCTTCATTCGTCAGCTCAATACCTATGGATTTCGAAAAACGCATGCTGAGCGTTGGGAGTTTGCTAATGATGATTTTATAAAAGATCAAAAACATCTTCTGAAGAATATACACCGCAGGAAACCTATACACAGTCATAGTCATCCTCCGGGTTCTGTTGTAGATCCTGAAAGGGCGTCGTATGATGAACAAATAGAGAAACTCTCGCGCGAGAAAAGTTCTCTTGAATCCAATCTCTTAAACTACAAGCATCATCAGTCAAAAACAAAGCTTCACTTGGAAGAATTTCAGAAGCGTTTGGATGGTATTGAGAACAGGCAAAAAAATTTGCTGAACTACTTTGAGAAGGCTCTTCAAAATCCTTCTTTTGTTAATCAACTTTTGTGCAAAATCGAATTCATGGATTTGGCGGCATTAAATAAAAAAAGGAGATTGCCTGAGGTTGATCCCGTGGAGCCTGTTGCTGAAGTTAGCTTGGTTGACAATCATAGCAATTTTAGACCGGAATTTGGAAATGTTTTCCAACAAGATTTCTCAAACAAACTCAGACTGGAATTGTCAGCAGCCGTCTCAGATATGAACTTGGTATCAGGTAGCACACAGGGTTCCAATGAAGATGAGGAAAGCCCACAGAAGAACATGTCTGATGGAGAACTGAAAGGAATGCAGACAAGAACTGCCCTTGCTTTTGCACCTGAAACAGTAGATCTTGCAGATACTGGGGCGTCTTTTACTTTTAACATGGATTCGTGTTTATCACGAAGAGCAACAACAACTGAGAATCCAAATCTTCACTCTCTGGAGCCAAGTAGTGAAGAAGGTGATAGTCATATATCCTGCCAACTGAATTTAACTCTGGCATCTTGTCCATTGGAATTCAACAGGAATTCATACTCAGCCCGATCACCCCAAATAGACTGTCAAGAAATTGGCAATTTGGCAGAATCAAGAGTTACCGCCAATGGTAAAGAATCTGAAAGTGGAGTTTCCTTAAACCGAATTGTGGCTAGCGGAGTTATCACTTTAGCTTCACCGCATGAGGCTTCAGGTAACGCCCAAGTCAAACCAGCTGCTCCACATGCAGTGAATGACGTGTTTTGGGAACAGTTCCTCACTGAAAGACCAGGCTGTTCAGACAATGAAGAGGCAATATCCAACTATCGAGCAAATCCATATGACGAGCAAGAGGAAGGACGGGCAGTTCATGGAATCTCCAGTAACATCAAGAATATGGATAATCTCACACTTTGA 1461 0.4257 METAPLSSATAAGNGGGPAPFLQKTYDMVNDHSTDEIVSWSSTNNSFIVWNPPEFACVLLPTYFKHNNFSSFIRQLNTYGFRKTHAERWEFANDDFIKDQKHLLKNIHRRKPIHSHSHPPGSVVDPERASYDEQIEKLSREKSSLESNLLNYKHHQSKTKLHLEEFQKRLDGIENRQKNLLNYFEKALQNPSFVNQLLCKIEFMDLAALNKKRRLPEVDPVEPVAEVSLVDNHSNFRPEFGNVFQQDFSNKLRLELSAAVSDMNLVSGSTQGSNEDEESPQKNMSDGELKGMQTRTALAFAPETVDLADTGASFTFNMDSCLSRRATTTENPNLHSLEPSSEEGDSHISCQLNLTLASCPLEFNRNSYSARSPQIDCQEIGNLAESRVTANGKESESGVSLNRIVASGVITLASPHEASGNAQVKPAAPHAVNDVFWEQFLTERPGCSDNEEAISNYRANPYDEQEEGRAVHGISSNIKNMDNLTL 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04535 486 MobiDBLite consensus disorder prediction 266 287 - -
Trre8g04535 486 PRINTS Heat shock factor (HSF) domain signature 72 84 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre8g04535 486 PRINTS Heat shock factor (HSF) domain signature 59 71 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre8g04535 486 PRINTS Heat shock factor (HSF) domain signature 21 44 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre8g04535 486 MobiDBLite consensus disorder prediction 109 129 - -
Trre8g04535 486 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 13 283 IPR027725 -
Trre8g04535 486 Coils Coil 128 155 - -
Trre8g04535 486 Pfam HSF-type DNA-binding 21 110 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre8g04535 486 SUPERFAMILY "Winged helix" DNA-binding domain 17 110 IPR036390 -
Trre8g04535 486 SMART hsfneu3 17 110 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre8g04535 486 Coils Coil 163 183 - -
Trre8g04535 486 Gene3D - 16 111 IPR036388 -
Trre8g04535 486 FunFam Heat shock transcription factor 1 14 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04535 Trre-Chr8 49383753 49386795 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04535 21 486 HSF AT4G13980 53.602 4.52e-155 447
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Trre8g04535 HSF_DNA-bind 8.9e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04535 K09419 - gmx:100786408 717.227