Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04534 ATGGGTCGTCGCAAAATTGAGATTGAGTCGGTGAAAGATCCTAACATAAGGCAGGTCACATTCTCAAAACGTCGATCTGGTTTGTTCAAAAAAGCAAATGAATTGTCTATTTTGTGTGGAGCAGAAATCGCTATTGTCATGTTTTCTCCAGGGAATAAGCCATACTCTTTTGGTCACCCAGGAGTTGATGCTGTTGCGGCCAAGTATCTTCAACAAGATCCTGAACCAAGTGACTCAGAAGGAGACCCCTCTTCGGATGCTTCCAATATGGACGAGTTGAATCTGGAACTTGAGGAGGTGTTGGCCCAAATTGGTGAAGATGAAAAGCAGGCTGAAACTTATGATGAGATTCTTAAGCAAAATGATGTGACAACACTCTCTGGCCTTGAAGAATTAAGAGATTCATATAAAGAGTTTCAGGATGGGGTAAAATCGCGTCTTAGTGATCTCGAGATATCAGAATGTATGATGCTTCTTGCTAAGGAGCCAGTGGTGGGGGTTAAAGCGTAA 510 0.4255 MGRRKIEIESVKDPNIRQVTFSKRRSGLFKKANELSILCGAEIAIVMFSPGNKPYSFGHPGVDAVAAKYLQQDPEPSDSEGDPSSDASNMDELNLELEEVLAQIGEDEKQAETYDEILKQNDVTTLSGLEELRDSYKEFQDGVKSRLSDLEISECMMLLAKEPVVGVKA 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04534 169 MobiDBLite consensus disorder prediction 71 92 - -
Trre8g04534 169 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Trre8g04534 169 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Trre8g04534 169 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Trre8g04534 169 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Trre8g04534 169 SUPERFAMILY SRF-like 1 73 IPR036879 GO:0003677|GO:0046983
Trre8g04534 169 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 57 IPR002100 GO:0003677|GO:0046983
Trre8g04534 169 PANTHER MADS BOX PROTEIN 3 143 - -
Trre8g04534 169 MobiDBLite consensus disorder prediction 77 91 - -
Trre8g04534 169 Coils Coil 90 110 - -
Trre8g04534 169 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Trre8g04534 169 Gene3D - 14 80 IPR036879 GO:0003677|GO:0046983
Trre8g04534 169 FunFam Agamous-like MADS-box protein AGL62 13 79 - -
Trre8g04534 169 CDD MADS_MEF2_like 2 71 IPR033896 GO:0000977|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04534 Trre-Chr8 49376287 49376796 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04534 1 162 Type I MADS-box Gene Family AT2G34440 41.860 5.13e-37 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trre8g04534 SRF-TF 2.6e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04534 - - mtr:11439559 239.195