Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04531 ATGGAAGCGGCTCCACTCTTTTCATCTGTCGCCACTACTGTAAACAAAGGAGATCTGGCTCCGTTTCTTGAGAAGACATATGACATTGTGAACGATCCCAACACAGACGAGATCGTTTCTTGGAGCTCTACCAACAACAGCTTCGTCGTTTGGAACCTTGCTGAATTCACTTACGTTATCCTGCCAACGTATTTCAAGCACAACAATTTCTTAACCTTCATCCGTCAACTCAGTACCTATGGATTTCGAAAAATAGATGCTGGGCAATGGGAGTATGCTAATGAAAATTTTATAAAAGATCAAAAGCATCTTCTGAAGAATATACAACGTAAGGACAGTCATAATCATCCTCTAGATCCTGAAGAACTAATAGAGAAACTCAACAATCATCAAAAAAGAACAAATCTTCAGCTGGAAAAGTTTAAGAAACGATTGGATGCTATAGAGACCATGCAAAACAATTTGATGAACTTATTTGAGAAAGCTCTTCAGAATCCTTCTTTTGTTGGTCAACATTCTGACAAATTTGCCTCAGGTTGA 540 0.3852 MEAAPLFSSVATTVNKGDLAPFLEKTYDIVNDPNTDEIVSWSSTNNSFVVWNLAEFTYVILPTYFKHNNFLTFIRQLSTYGFRKIDAGQWEYANENFIKDQKHLLKNIQRKDSHNHPLDPEELIEKLNNHQKRTNLQLEKFKKRLDAIETMQNNLMNLFEKALQNPSFVGQHSDKFASG 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04531 179 Coils Coil 124 158 - -
Trre8g04531 179 SUPERFAMILY "Winged helix" DNA-binding domain 19 111 IPR036390 -
Trre8g04531 179 Pfam HSF-type DNA-binding 22 111 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre8g04531 179 Gene3D - 14 112 IPR036388 -
Trre8g04531 179 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 19 172 IPR027725 -
Trre8g04531 179 PRINTS Heat shock factor (HSF) domain signature 60 72 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre8g04531 179 PRINTS Heat shock factor (HSF) domain signature 73 85 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre8g04531 179 PRINTS Heat shock factor (HSF) domain signature 22 45 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre8g04531 179 SMART hsfneu3 18 111 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre8g04531 179 FunFam Heat stress transcription factor B-4 14 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04531 Trre-Chr8 49357755 49359121 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04531 8 169 HSF AT4G13980 48.936 2.86e-50 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Trre8g04531 HSF_DNA-bind 1.6e-29 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04531 K09419 - tpra:123914579 233.802