Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04518 ATGCTCCAAATCTCTTTCTTCTTAATTTCCATCATCACCGCCACCACCACCACCACCACCACCGTCATCGCCGATAATGACGATGACTCCGCCGTCATGTTAAACCTTAGAAAATCCCTAAAACCACCTCCATCCGGCTGGTCTTCCGATACTCAATTCTGTCAATGGGATCAAAAAATCACGTGCGATTCATCAAATCGCCGCGTAACCTCCATAGACCTCTCTTCTCGAAAACTCGCCGGAAACCTACCTTCCAATCTCAACTCTCTCACTCAACTCACATCTCTTAAACTTCAAAACAACTCTTTCTCCGGTCCTCTTCCTTCTCTCGCCAACCTCTCCTCTCTCACAACCGCCAATCTCGGCAATAACCAATTCAACTCCGTACCTCCCTCCGCATTTTCCGGCCTAACTTCACTCCAAACTCTCACTCTCAGCAACAATCCTTTCCCTCCATGGACATTCCCGGCCGAGTTAACTCAAGTTCCCAATCTCAACTACCTCGATCTTGATTCCACAAATATCAACGGAACGTTACCGGACATTTTCAACAATTTCGCTGCTCTCACCACCCTTCAACTCGCCTATAACAATCTCACCGGAGAATTACCTAACTCTCTCGCCACTTCCTCAATCCAAAATTTATGGCTCAATAACAACAACGCCGGATTAACCGGTTCAATCGCCGTGATTGCCAACATGACGCAGTTATCTCAAGCATGGCTTCATGTTAATCAGTTCACAGGTCCAATTCCAGATTTATCACAATGTACCAATTTGGTTGATTTGGAACTTAGGGATAATAAGTTAACTGGTTTGGTTCCTGATTCTCTGATGAGTATGTCTAGCTTGCAGAAGGTTTCTCTTCGAAATAATAATCTTCAGGGACCTTATCCAGTTTTTAAAGGTGAAAATATGACAGTTGAAGTTGATGGGGGAAATAATTTTTGTCTTGGTAACAAACCAGGACCTTGTAATGATATGGTTATGGTTTTGCTTCACATTGCTGAGGGATTTGGGTATCCTGATATATTGGCGCAGGCGTGGAACGGGAACGATCCTTGTCAAGGTCAAAGTTGGCGGTTTATTGTGTGTGATAACGATAAGAATATTGTGTCTGTGATTTTAGTGAAGCAGAATTTGCAGGGAACAATTTCGCCTGCTTTTGCCAATTTGAAAAAATTGAAGAAATTGAATCTATCTGGGAATAATTTGACTGGTTCTATACCTCAGAGTTTGACTACATTGTCTCAGCTTGAGAGTCTTGATGTCTCTAACAATAACCTATCAGGAGTGGTTCCCAAATTCTCACCGAAGGTGACGTTAGTAACTGGTGGTAATGTTTGGATTGGTAAAAATCTTGGTTCTGGTACTGATGGAAGAGCTGATGGATCGGGAAAGGGTAATTCGATGACGCCAGGTTCGATTGCTGGTATAGTGATTATTGTTGTGCTTTTTGTTGTTGCTGTGTTGTTTGTTTCTTGGAGGTGTTATTCTAGAAAGCGGCTTCGGAAATTTGCAAGGGTTGGTAATCCTGAAAATGGGGAAGGGAATGTTAAGCTTGGTCTTGCGAGTGTTTCGAATGGATATGGTGGTGTTCCGAGTGAGTTGCAAAGCCAGAGCAGTGGTGATCATAGTCAGCTTCACGGTTTTGATGGGGGGAGTGATGTAAATCCTACGATTTCGATTCATATTCTTCGACAAGTGACAAATGATTTCAGCGACGATAACATTTTGGGAAGGGGAGGGTTTGGTATTGTTTATAAAGGCGAGTTACCTGATGGAACTAAAATTGCTGTCAAGAGGATGATATCCGTTGCATCGGGAAGCAAAGGGTTGAATGAGTTTGAAGCAGAGATTGCTGTTCTTACTAAGGTTAGGCATAGACATCTGGTTGCTCTTATGGGATATTGCATCAATGGAAATGAGAGGCTTTTGGTATATGAGCATATGCCTCAAGGGACATTAACGCAGCATCTGTTTGAATGTCGTGAACATGGGTATACTCCTTTGACATGGAAACAAAGGTTGGTAATAGCTTTGGATGTTGGACGGGGGGTGGAATACTTGCACAGCTTAGCTCGGCAAAGCTTCATTCATAGAGACTTAAAACCATCAAATATACTATTAGGCGATGACATGAGAGCAAAGGTTGCAGATTTTGGATTGGTTAAAAATGCACCAGACGGGAAGCATTCTATTGAGACAAAGTTGGCTGGAACATTTGGATATCTTGCACCCGAGTATGCAGCTACTGGAAGAGTGACAACCAAAGTAGATGTTTACGCATTTGGAGTAGTTTTGATGGAACTGATCACAGGTAGAAAGGCATTAGATGATACTGTGCCTGGTGAAAGGTCTCATTTGGTTACTTGGTTCCGTAGGGTACTAATTAACAAGCAAGACATTCCAAAGGCAATTGATCAAACTCTCAACCCAGATGAAGAAACAATGATGAGCATATATAAAGTGGCTGAACTGGCTGGCCATTGCACCGCTCGTGAACCATACCAAAGGCCAGATATGGGGCATGCCGTGAATATGTTGGGTCCCCTTGTGCAGCTATGGAAACCTACTGCCCAAACAGACGAAGGAAATTATGGCGTTGACAATCAGATGAATCTCGCTGAAGCACTACAAAGGTGGCAAGCCCATGAAGGCACTTCATCGATATTTAGTGACATGTCCTACTCACAAACCCAAACAAGTTCTAAACCTCCATTATTTGCGCCTTCGTTTGATTCACCGGATTGCCGGTAG 2760 0.4322 MLQISFFLISIITATTTTTTTVIADNDDDSAVMLNLRKSLKPPPSGWSSDTQFCQWDQKITCDSSNRRVTSIDLSSRKLAGNLPSNLNSLTQLTSLKLQNNSFSGPLPSLANLSSLTTANLGNNQFNSVPPSAFSGLTSLQTLTLSNNPFPPWTFPAELTQVPNLNYLDLDSTNINGTLPDIFNNFAALTTLQLAYNNLTGELPNSLATSSIQNLWLNNNNAGLTGSIAVIANMTQLSQAWLHVNQFTGPIPDLSQCTNLVDLELRDNKLTGLVPDSLMSMSSLQKVSLRNNNLQGPYPVFKGENMTVEVDGGNNFCLGNKPGPCNDMVMVLLHIAEGFGYPDILAQAWNGNDPCQGQSWRFIVCDNDKNIVSVILVKQNLQGTISPAFANLKKLKKLNLSGNNLTGSIPQSLTTLSQLESLDVSNNNLSGVVPKFSPKVTLVTGGNVWIGKNLGSGTDGRADGSGKGNSMTPGSIAGIVIIVVLFVVAVLFVSWRCYSRKRLRKFARVGNPENGEGNVKLGLASVSNGYGGVPSELQSQSSGDHSQLHGFDGGSDVNPTISIHILRQVTNDFSDDNILGRGGFGIVYKGELPDGTKIAVKRMISVASGSKGLNEFEAEIAVLTKVRHRHLVALMGYCINGNERLLVYEHMPQGTLTQHLFECREHGYTPLTWKQRLVIALDVGRGVEYLHSLARQSFIHRDLKPSNILLGDDMRAKVADFGLVKNAPDGKHSIETKLAGTFGYLAPEYAATGRVTTKVDVYAFGVVLMELITGRKALDDTVPGERSHLVTWFRRVLINKQDIPKAIDQTLNPDEETMMSIYKVAELAGHCTAREPYQRPDMGHAVNMLGPLVQLWKPTAQTDEGNYGVDNQMNLAEALQRWQAHEGTSSIFSDMSYSQTQTSSKPPLFAPSFDSPDCR 919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04518 919 ProSiteProfiles Protein kinase domain profile. 573 853 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g04518 919 CDD STKc_IRAK 579 852 - -
Trre8g04518 919 Gene3D Phosphorylase Kinase; domain 1 538 650 - -
Trre8g04518 919 MobiDBLite consensus disorder prediction 896 919 - -
Trre8g04518 919 Pfam Leucine rich repeat N-terminal domain 27 63 IPR013210 -
Trre8g04518 919 Pfam Leucine rich repeat N-terminal domain 332 366 IPR013210 -
Trre8g04518 919 Pfam Protein kinase domain 574 847 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g04518 919 FunFam receptor-like protein kinase FERONIA 537 650 - -
Trre8g04518 919 SUPERFAMILY L domain-like 41 440 - -
Trre8g04518 919 SUPERFAMILY Protein kinase-like (PK-like) 561 864 IPR011009 -
Trre8g04518 919 SMART LRR_typ_2 186 210 IPR003591 -
Trre8g04518 919 SMART LRR_typ_2 257 280 IPR003591 -
Trre8g04518 919 SMART LRR_typ_2 416 438 IPR003591 -
Trre8g04518 919 SMART LRR_typ_2 137 162 IPR003591 -
Trre8g04518 919 SMART LRR_typ_2 113 136 IPR003591 -
Trre8g04518 919 SMART LRR_typ_2 392 415 IPR003591 -
Trre8g04518 919 ProSiteProfiles Leucine-rich repeat profile. 394 417 IPR001611 GO:0005515
Trre8g04518 919 FunFam Receptor-like kinase TMK4 27 323 - -
Trre8g04518 919 Gene3D Transferase(Phosphotransferase) domain 1 651 872 - -
Trre8g04518 919 Pfam Leucine rich repeat 92 149 IPR001611 GO:0005515
Trre8g04518 919 Pfam Leucine rich repeat 370 429 IPR001611 GO:0005515
Trre8g04518 919 ProSitePatterns Serine/Threonine protein kinases active-site signature. 698 710 IPR008271 GO:0004672|GO:0006468
Trre8g04518 919 Gene3D Ribonuclease Inhibitor 328 453 IPR032675 -
Trre8g04518 919 Gene3D Ribonuclease Inhibitor 25 321 IPR032675 -
Trre8g04518 919 PANTHER OSJNBA0070M12.3 PROTEIN 14 919 - -
Trre8g04518 919 ProSitePatterns Protein kinases ATP-binding region signature. 579 601 IPR017441 GO:0005524
Trre8g04518 919 FunFam receptor protein kinase TMK1 651 868 - -
Trre8g04518 919 SMART serkin_6 573 853 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g04518 919 FunFam Leucine-rich repeat receptor-like kinase 327 453 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04518 Trre-Chr8 49284765 49288366 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04518 69 842 Receptor kinase-like Gene Family AT5G07280 31.663 1.52e-90 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Trre8g04518 Pkinase 8e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04518 - - gmx:100286794 1142.1