Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04509 ATGCATAACCAAGATCAAACTCCAGGACACGAAAATCATGGAGTTTATGTGTGTCACAAATGTGGATGGCCTTACCCAAATCCACATCCTAGTGCTAAACACAGACGTTCTCACAAGAAGATCTGTGGAACCATTCAAGGTTACAAACACCAACAAACACAAGGTTTGGTTGTGTCTGGTTCAAATAATGAGAATGATGGAATTGAAGGGAAATTAATTAGGTCAGAAAGTGAGGTGTATTCAGATGCAGTTGCTGATTTTTCAGATAATAATGGATCAAGTCCAGGAGTTAAGCAAATTTTGCAACAAGAACGAGATAGTTTGGACTCAGGCATTGATTTCGAAAGAGTCAACAACATAAAGGAGCATACTCTTTTAGCTTCTTCCAAGTACAATGACTTTAATGCTGCAGATGAGAGTCCATTGATTGCCAACTCAAGCAATGACGGCCACATTAAAAATCCAAAAATTCCACCATGTGAAAGTTCTGAAGTTGGAAATACAGTTGGGTCGCAAGGTCAATCCTCAGTCTCTACTGTGGATCCATTAACAAGCTCAATTGCAGATTTGAAGACTGAAGAATCGAGTATTGTGCATGGTGATGGTTTTTCTGGTTTGTCAAGTGACTCAAGTCTCAGCAAAGCTACTGTGGATCCGTTGGCAAGCTCAATTGCAGATTTGGAGACTGAAGAATCGTGTATTGTGCATGGTGATGGTTTTTATGGTTTGTCAAGTGACTCAAGTGTCAGCAAAGCTGAAGCCATGCCTGAAGTATTGCCTGAAAAAAATATCTATGCTGCTGAAAATGTGACAGATTATAGTTTGATATGTGATGAAAAGAAGTCTAATTTGAAAGGAAGCGATGAGGTAAAATCAGAAAGAGACATGGTTGAAATTTTGGAGTCAACTGATAGCATTGTAAGTGATGGAGCTGTTAATCCGATGGAAAATAAGGGATCCGAGTTTGTTTCTTTGCTGCCCCAAAATGAACTTCCTGTAGAGGTAAACTCGTCTATAATCACAAATGATGCTCAGTTAGAATCTGCACGTGCAATACAGTCTACTACTTGCAGTGAAGTCAAGGTTTCACAGGAAAAGGAAGACATGAATGTTAATATTGATCCACTTCCTGTGCATGATGATAAACTTGATGTAGCTTATCCTCAGAGTGAGTTATTGAAACACGAGGAAGATGTTACCAATGAAAATAATTCTCATTTCAACACAAACCAATTGAGTGAAAGGAGTCATGTCATCTCTTCAGATATGAATCTTATGGATAGTAAAATGAAGACGGACTCTGACGATTGTTCTGAAGTTTCGTTGGTTGAACTCACAACCGAAACTTATCAAAGACCACATGAAATTGGAGTTTCTATGAAACCTGAGATGAATGAGAATAATTTTTCTGAAGAACATGGACCTGGTGACATTCATGAAAATTCTCAACCCGAAAGTAGTTTTATGGTTTCATCAAATGAATATCAGAGGGAGACGTCCTTTCAGTCTGCGACCGATGACACATTCAACATCAATAATGACACAGCTGAAATAAATGATGTATCAGTAGATGGAAAGATTATAGGAGCTAATGTGGAAAATGACACTGAAGTTATAGTCAAAGATTTCCAACCTAGTGACCTCTTGCAACCAGAAGTTGAGCAATCAAGTGACTTATTTAGGAATAATAGCGATGATGCTGGTGAAACTGGTAAAATTGAAGGTGAAATCAATAGCAATATCAACATATATGAAGAACATAACGAACCCACTGGTATTGCTGCTGGCTCACATGAAGAACAAGATGCACAACTATTGGTGACTGCTGCGGAAGACTCATATGAAGAACAAGATGCACATCTATCAGTGAATGCTGCGGAAGACTCGCATGAAGAGCAAGATGCACAACTATCGGTGAATGCTGCGGAAGACTTTTCCAGCAAGCATACACCACATTCTTCGATAAATACTGTTCCTTCTGCTCAACTCGATTCTGCTGTTGAAGATGATACTACTGGAGAGCCTGTTCAAGATCAAAGCAATAATACATCGGTTAAATTTGGTTCATCTGGAATTGATACTTCCGCCGACTCACTTGAAGCGCGAGATGCACAACTATTAGTGAAGGCTATAGAAGACCTTGCAAGCAAGTATACATCAAATTCTTTTATAAATGCCGAGACTTCTGCCGTTGAAGATAATTCAGATGAAGTGACCAGAGTTACTGATGTGCCACTGCCTGTTCAAGATCAAAGCGTTAATAATTTGACTAAACTAACTTCACCCGGAACTGAGGCTTCGGTTGACTCTGGTAGCCGGCGTTACAGTTTGGATGGAAACTGGGGCTCTAGTTCAGTTATCTCGATGATATCTGATGCACCAGCTGTTCTTGATGGAGAAACCTTACCATCAACTGGTCCACAGGCATCAACAGAAGCTAGCAAATCAGACGTGAACATCCCACGGGCTGCACCTGCTGATAGACAGCTATCTGGAAAATCAGAAACGTTTGAGCTTCCATCTTTCACGACATTGGTTGAGCCAAGCCATGTGGCAGCTAGTCCTAACGGTGCCACAACGGCTTCTGAAATCCAGAACCCGCAACAGTCAAATTCCACCTCACAAGCTGCTTGGTTTCCAACTCTAAATCAGGTTATCAACGAGCCTCAAGGCAGAAAAAAGAACGAAGAGACAATCAGCAAGATAACAAAACGAAGCAGCAGTAAAGAGCACACACCTCTGAAGAGTCTCTTGGGTGAGGCCACTAATAGCAGCAGCAATCCGAAATCACCAAAAATGGAAGAAAATAATAAAGGTTCTGGATTGACAACTGTTAACTCGATTCTTGGTCCCGAGTCCCCTTCGGCAGCTCAAACTGCGAAAGAAAAGGCCGCAAATGAATGGAACTCTCCAGCAAGATATCCTGCAAACATCAAGAGAGAGAAAAAGAAATTGAAGAGCAGACCATTTTGGATACAGTTGGTTTGTTGCTCAACAGTGGATCCTCAGCGCCGGTAG 3018 0.4085 MHNQDQTPGHENHGVYVCHKCGWPYPNPHPSAKHRRSHKKICGTIQGYKHQQTQGLVVSGSNNENDGIEGKLIRSESEVYSDAVADFSDNNGSSPGVKQILQQERDSLDSGIDFERVNNIKEHTLLASSKYNDFNAADESPLIANSSNDGHIKNPKIPPCESSEVGNTVGSQGQSSVSTVDPLTSSIADLKTEESSIVHGDGFSGLSSDSSLSKATVDPLASSIADLETEESCIVHGDGFYGLSSDSSVSKAEAMPEVLPEKNIYAAENVTDYSLICDEKKSNLKGSDEVKSERDMVEILESTDSIVSDGAVNPMENKGSEFVSLLPQNELPVEVNSSIITNDAQLESARAIQSTTCSEVKVSQEKEDMNVNIDPLPVHDDKLDVAYPQSELLKHEEDVTNENNSHFNTNQLSERSHVISSDMNLMDSKMKTDSDDCSEVSLVELTTETYQRPHEIGVSMKPEMNENNFSEEHGPGDIHENSQPESSFMVSSNEYQRETSFQSATDDTFNINNDTAEINDVSVDGKIIGANVENDTEVIVKDFQPSDLLQPEVEQSSDLFRNNSDDAGETGKIEGEINSNINIYEEHNEPTGIAAGSHEEQDAQLLVTAAEDSYEEQDAHLSVNAAEDSHEEQDAQLSVNAAEDFSSKHTPHSSINTVPSAQLDSAVEDDTTGEPVQDQSNNTSVKFGSSGIDTSADSLEARDAQLLVKAIEDLASKYTSNSFINAETSAVEDNSDEVTRVTDVPLPVQDQSVNNLTKLTSPGTEASVDSGSRRYSLDGNWGSSSVISMISDAPAVLDGETLPSTGPQASTEASKSDVNIPRAAPADRQLSGKSETFELPSFTTLVEPSHVAASPNGATTASEIQNPQQSNSTSQAAWFPTLNQVINEPQGRKKNEETISKITKRSSSKEHTPLKSLLGEATNSSSNPKSPKMEENNKGSGLTTVNSILGPESPSAAQTAKEKAANEWNSPARYPANIKREKKKLKSRPFWIQLVCCSTVDPQRR 1005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04509 1005 ProSitePatterns Zinc finger C2H2 type domain signature. 18 38 IPR013087 -
Trre8g04509 1005 MobiDBLite consensus disorder prediction 852 889 - -
Trre8g04509 1005 MobiDBLite consensus disorder prediction 852 985 - -
Trre8g04509 1005 MobiDBLite consensus disorder prediction 890 911 - -
Trre8g04509 1005 PANTHER PENTATRICOPEPTIDE REPEAT (PPR) SUPERFAMILY PROTEIN 1 1000 - -
Trre8g04509 1005 MobiDBLite consensus disorder prediction 161 182 - -
Trre8g04509 1005 MobiDBLite consensus disorder prediction 917 965 - -
Trre8g04509 1005 MobiDBLite consensus disorder prediction 798 834 - -
Trre8g04509 1005 MobiDBLite consensus disorder prediction 164 182 - -
Trre8g04509 1005 MobiDBLite consensus disorder prediction 612 637 - -
Trre8g04509 1005 MobiDBLite consensus disorder prediction 803 817 - -
Trre8g04509 1005 MobiDBLite consensus disorder prediction 555 575 - -
Trre8g04509 1005 MobiDBLite consensus disorder prediction 613 634 - -
Trre8g04509 1005 MobiDBLite consensus disorder prediction 668 689 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04509 Trre-Chr8 49211353 49215777 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre8g04509 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04509 - - tpra:123914238 1613.2