Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04507 ATGCAATCCCTCAAGTTACGCACACTACTTTTTTATCCTCCTTTCACTTCTAACTCACTTCAATCCTTTATCTTTTCATTTTCCACTGTTTCTTTATCATCCACAAAAACCCAATTCTCAAAAGAAACCACTTCTCTATTTAACTTCCTTAATTCCAATGCCAAATTACCTAAATCACACTCCATTTTTATCTCTAAACGTGCTTCAAGGGCTACATTCCCTCAAAGGCCCTTATCTGTTATCAACTTTTTCAAACAAAATGGATTTTCCGAAACTCAGATTCACTCTATCGTTCGTCAGAGAGTTCAATTACTGTTTTCAGATGTTGATAAAACTCTTAAACCTAAACTTGAGCTCTTTCGGCAAATGGGTTTTCAGGGTTCGGATTTAAGCGACTTTATTTCCAAGCATCCAACTGTTTTGACTGCTAGTTTGAACAAAACATTGGTTCCGTCAGTGAAAGCTATTAAGAAAATTGTATGGAATGATAAAGAGCTTGTTCAAGTTTTGTCTAAATGTGGTTGGATACTCCCAAAGTACCAATTATTTGTTGCCAATGTTGCTTTCTTAGAGAGTTTTGGCATTGGCGGGGATCAGGTTGTGATTCTACTCAAGCGACAGTCAAGACTTTTGGTTTCATCGCTGTCTACTATTAGAAAGTATGTTTTGCAAGCAGAAGAATTGGGTTTCAATCAAAATTCAAGAATGTTTATTCATGGACTTCATACGATATGCGCTTTGAGCCATAAAACATTTAAGAAAAAGCTGGATTTAATTCAGTGTTTTGGGTTTTCTAAAGATGAGAGCTTGCTTATGTTCAAAAAGGCTCCAGCTTTGTTTAGGACATCTGAGAAGAAATTAAAGATTGGAATTGAATTCTTCTTACATACAGTTATGCTGCCAAAGTCAATATTGGTTAGTCGGCCTACGATTTTGATGTATAGCATTGAGGATCGAGTGTTTCCTCGATATAGAGTTTTTCAGCTTTTGAAATCACAAAACCTATGTAAGAAGGGTCCAAGCTTTGTTTCTATGTTATGTTATTCTGAGGACATGTTCTTGGACAAGTTTATATCGAAGTTTAAAGGAAATGCAGAGGCATTATTGATAGCTTACAAGGGGCATCTTCTGGAAGCCTGGAACGAAAGGAAGGATTAG 1158 0.3627 MQSLKLRTLLFYPPFTSNSLQSFIFSFSTVSLSSTKTQFSKETTSLFNFLNSNAKLPKSHSIFISKRASRATFPQRPLSVINFFKQNGFSETQIHSIVRQRVQLLFSDVDKTLKPKLELFRQMGFQGSDLSDFISKHPTVLTASLNKTLVPSVKAIKKIVWNDKELVQVLSKCGWILPKYQLFVANVAFLESFGIGGDQVVILLKRQSRLLVSSLSTIRKYVLQAEELGFNQNSRMFIHGLHTICALSHKTFKKKLDLIQCFGFSKDESLLMFKKAPALFRTSEKKLKIGIEFFLHTVMLPKSILVSRPTILMYSIEDRVFPRYRVFQLLKSQNLCKKGPSFVSMLCYSEDMFLDKFISKFKGNAEALLIAYKGHLLEAWNERKD 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04507 385 Gene3D Transcription termination factor 3, mitochondrial 58 179 IPR038538 -
Trre8g04507 385 Gene3D Transcription termination factor 3, mitochondrial 180 363 IPR038538 -
Trre8g04507 385 Pfam mTERF 81 233 IPR003690 GO:0003690|GO:0006355
Trre8g04507 385 Pfam mTERF 182 353 IPR003690 GO:0003690|GO:0006355
Trre8g04507 385 Pfam mTERF 147 259 IPR003690 GO:0003690|GO:0006355
Trre8g04507 385 PANTHER CGI-12 PROTEIN-RELATED 49 360 IPR003690 GO:0003690|GO:0006355
Trre8g04507 385 SMART mt_12 131 162 IPR003690 GO:0003690|GO:0006355
Trre8g04507 385 SMART mt_12 302 333 IPR003690 GO:0003690|GO:0006355
Trre8g04507 385 SMART mt_12 201 231 IPR003690 GO:0003690|GO:0006355
Trre8g04507 385 SMART mt_12 95 126 IPR003690 GO:0003690|GO:0006355
Trre8g04507 385 SMART mt_12 235 265 IPR003690 GO:0003690|GO:0006355
Trre8g04507 385 SMART mt_12 270 301 IPR003690 GO:0003690|GO:0006355
Trre8g04507 385 FunFam Mitochondrial transcription termination factor-like 145 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04507 Trre-Chr8 49207693 49209176 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Trre8g04507 mTERF 2.8e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04507 K15032 - aew:130752103 327.405