Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04490 ATGGGAGCACTTAGCACATACTATAATTGTTACCCTTATCAACCTCATCAAACTAACAACAACTCAGAAATCATCACTTTTCAACATCATGAACAACAAGAACAACAACAACAATCATTACCTCAATTATCACAAATTTCAGAACATGATAATAACTACCATTTTTCTTCTTACTTAGATGAAACCATGTTTTTCCAAAGTCCTTATTTTTATTCAAATGAGACTTACCCTTCTTATGAACAACTACTTGTTGACACCACTTTCTCTTCTCAAAATGATGGTTTCATTTCAATGAATGAAATTTTCTCAAATGAAGAAAATTTCAATTTCAACACCTACCTTCCATGCACAAAACGACAAAAGCTATGTTATGAGGAGAAAAAAGTACAACAACAAGAAGAGATTTTGAACTCAACCAATTTTTTTGTGGATGAGTTTATCACTAACCCTTTTGTTTCTTTCGAAGCAGAACAACCGTTTTGTTCTGCTTCAAAAATTGTTGATGTTGTTGGTTGTGAGAAGAAAGTGAACGAAAAGACTATCTCGCCGCAGAGTATTGCGGCGAGAGAAAGAAGAAGAAAGATAACTGAGAAGACACAAGAGCTTGGAAAGTTGGTTCCTGGTGGTTGTAAGATGAACACAGCAGAGATGTTTAATGCTGCTGCTAATTATGTTAAGTTTCTTCAAGCTCAAGTTGGAATGCTTCAAGTTATGGGAACATTAAGCAAGGAAGAAAAGGAACCTCCTCCAAGTGAAGATCTACACAAACTACTTGTTTCTCTTTTTGTTCAAGAGAAATTGTATTTGGAAGAAAAGTGCTTTGTTCCAAAAGAGTTTGTCACCGCATTAACCAATAATGATGATGTTAGATCAAAACCTACCATCCTTAAGGGTCTTAAGCAGCTTATTGGAAAAGAGATTAATGAGAAGAAACCAAAGCAAGAATAA 948 0.346 MGALSTYYNCYPYQPHQTNNNSEIITFQHHEQQEQQQQSLPQLSQISEHDNNYHFSSYLDETMFFQSPYFYSNETYPSYEQLLVDTTFSSQNDGFISMNEIFSNEENFNFNTYLPCTKRQKLCYEEKKVQQQEEILNSTNFFVDEFITNPFVSFEAEQPFCSASKIVDVVGCEKKVNEKTISPQSIAARERRRKITEKTQELGKLVPGGCKMNTAEMFNAAANYVKFLQAQVGMLQVMGTLSKEEKEPPPSEDLHKLLVSLFVQEKLYLEEKCFVPKEFVTALTNNDDVRSKPTILKGLKQLIGKEINEKKPKQE 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04490 315 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 182 237 IPR036638 GO:0046983
Trre8g04490 315 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 179 228 IPR011598 GO:0046983
Trre8g04490 315 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 25 245 IPR045843 GO:0003700|GO:0006355
Trre8g04490 315 Gene3D - 179 247 IPR036638 GO:0046983
Trre8g04490 315 SMART finulus 185 234 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04490 Trre-Chr8 49122293 49125123 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04490 40 307 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G34820 38.078 2.33e-29 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre8g04490 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04490 - - tpra:123914583 528.48