Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04480 ATGGAAATTGTTCGACCTCAGAGTCACCGGAACTTGTTTTCCTCTAACGACGTCGTTTCTGTTCCAACTATTCCCCTCTATCGCTCTGCTCCGCCGCTCGAAGTCAGACTCGAAGATTTCGAGTCCTTTGCCATCGATCGCCTCCGAGTTCTGAAGGGGATTTCTGATGGTTTGTCACGGGGGAAGAAACCGGATGAAATGGAAAAATTGGTAAAAGAATCGTGGAAAGTGCACATGAGACATCAGCATGCTTCTGAAGTTCTGAACAAGGATATTATATCTCATTTTGTTTTACGTTTGGTGTATTGCAGAACGGAAGACTTGAGGAAATGGTTTCTCTCTATGGAATGTGTGCTTTTTCGCTACCGTTTTCGCCTTTTAACTCCTGAAGCTCAGAGGGCAATCATGGACGAATTTGACCTTACTTGCAAGGCTGTTAATAACGTGGAATTTGAGAGCATAAAAGAGAAATTAGGACAAGTTGCACGTTCCATGGGTCAGTCTTCACCCACAGTCGATACTATATTTTACAAGGTGCCATTTGAAGAAGTTCCAGAACTTGTAGCTGGACGTAAAGTATTTATAAGTCAAGGATATGCTTATGTTGCAATGAATCAGGTTGTTTCACTTGTAGCTACTCTATTCCGCAGTCAGCTGTCAAAAACACTCATCCTTACAAACAGAAAATGGACAGCTTCAATCAGAGATCAAGAGAAGCATAGGTTGACTCCTATTGTGGAAGCCTTGAGCTCAAGTTATCTGGGTCCTGATTTTTCTCAGCCAAGAGAATATGCTGAGATATCTTTGAAGGACATTGATCAAGTTGCCAAGACCTCGTTTCCTTTGTGCATGCGTCACCTGTTTGATAAGCTGAAAGAGGACCATCATTTAAAGCACGGTGGGAGGATGCAACTAGGCCTCTTTCTCAAGGGTGTTGGTTTAAACCTGGATGATGCACTTGCGTTTTGGAGAGCCGAGTTCTCTAAGAAGGTTGGTTTGGAGAAGTTTGAGAAAGAATATTCATATGACATACGACATAATTATGGAAAGGAAGGGAAGAGAACTGATTATACTCCCTATTCTTGTCAAAAGGTTATTTCATCAACTCCCGGTGCTGGAGATCAGCATGGTTGCCCCTATCGACAGTTCAGTGAGGAGAATCTAAGAGCTGCTCTCAGCAGAATGGGGGTGAACAGTCGAGCAATGGAAGATGTCATGGACAAAGTGCGAAATAGACATTATCAGTTAGCATGTACCTTGACATTTGAAGCTCTTCACGGCGTGACATGTGATGCAGGGATTAACCATCCAAATCAATATTTCAGTGACAGTCAAAAGATATTGCAACCAAAGGTAGACAATGACTTGTATTAA 1374 0.425 MEIVRPQSHRNLFSSNDVVSVPTIPLYRSAPPLEVRLEDFESFAIDRLRVLKGISDGLSRGKKPDEMEKLVKESWKVHMRHQHASEVLNKDIISHFVLRLVYCRTEDLRKWFLSMECVLFRYRFRLLTPEAQRAIMDEFDLTCKAVNNVEFESIKEKLGQVARSMGQSSPTVDTIFYKVPFEEVPELVAGRKVFISQGYAYVAMNQVVSLVATLFRSQLSKTLILTNRKWTASIRDQEKHRLTPIVEALSSSYLGPDFSQPREYAEISLKDIDQVAKTSFPLCMRHLFDKLKEDHHLKHGGRMQLGLFLKGVGLNLDDALAFWRAEFSKKVGLEKFEKEYSYDIRHNYGKEGKRTDYTPYSCQKVISSTPGAGDQHGCPYRQFSEENLRAALSRMGVNSRAMEDVMDKVRNRHYQLACTLTFEALHGVTCDAGINHPNQYFSDSQKILQPKVDNDLY 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04480 457 PIRSF DNA_primase_large 3 455 IPR016558 -
Trre8g04480 457 CDD PriL_PriS_Eukaryotic 26 444 IPR016558 -
Trre8g04480 457 PANTHER DNA PRIMASE LARGE SUBUNIT 20 451 IPR007238 GO:0006269
Trre8g04480 457 FunFam DNA primase large subunit 5 249 - -
Trre8g04480 457 Pfam Eukaryotic and archaeal DNA primase, large subunit 176 441 IPR007238 GO:0006269
Trre8g04480 457 Gene3D - 6 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04480 Trre-Chr8 49062679 49068591 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04480 1 452 Core DNA Replication Machinery Family AT1G67320 66.803 0.0 679
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04480 K02685 - gmx:100816023 818.15