Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04478 ATGCTCAAAACGCTAGAGAGGTATCAGAAATGCAACTATGGTGCACCTGAGACTAATGTGTCTACACGAGAAGCCTTGGAATTTAGCAGTCAACAGGAATATTTGAAGCTGAAAGCACGTTATGAAGCATTACAACGGTCTCAGAGGAACCTTATGGGAGAAGATCTTGGCCCTCTGAGCAGTAAAGAGCTAGAGACGCTTGAAAGGCAGCTAGATTCTTCCTTGAAGCAAATAAGATCAACAAGGACTCAATTTATGCTGGATCAGCTCTCTGATCTTCAACGCAAGGAACATATGCTAAGTGAGGCTAACAGGTCCCTCAGACAAAGGCAGTTGGAAGGGTATCAATTAAATCAACTCCAAATGAATGCTTGTGTTGAAGAAATGGGCTATGGTCGCCATCCAAGTCAAACTCAGGGTGATGGCCTCTATCAACAACTGGACTGTGAGCCAACATTACAAATTGGTTATCAGGCCGATCCAGGGTCAGTGGTTACGGCAGGCCCAAGCATGAGTAATTACATGGGGGGATGGTTACCATAG 543 0.4494 MLKTLERYQKCNYGAPETNVSTREALEFSSQQEYLKLKARYEALQRSQRNLMGEDLGPLSSKELETLERQLDSSLKQIRSTRTQFMLDQLSDLQRKEHMLSEANRSLRQRQLEGYQLNQLQMNACVEEMGYGRHPSQTQGDGLYQQLDCEPTLQIGYQADPGSVVTAGPSMSNYMGGWLP 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04478 180 Pfam K-box region 30 110 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre8g04478 180 Coils Coil 90 110 - -
Trre8g04478 180 ProSiteProfiles K-box domain profile. 27 123 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre8g04478 180 Coils Coil 64 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04478 Trre-Chr8 49033077 49036007 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04478 1 180 MADS-box Gene Family AT1G24260 62.703 1.44e-65 199