Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04477 ATGCTCAAAACGCTAGAGAGGTATCAGAAATGCAACTATGGTGCACCTGAGACTAATGTGTCTACACGAGAAGCCTTGGAATTTAGCAGTCAACAGGAATATTTGAAGCTGAAAGCACGTTATGAAGCATTACAACGGTCTCAGAGGAACCTTATGGGAGAAGATCTTGGCCCTCTGAGCAGTAAAGAGCTAGAGACGCTTGAAAGGCAGCTAGATTCTTCCTTGAAGCAAATAAGATCAACAAGGACTCAATTTATGCTGGATCAGCTCTCTGATCTTCAACGCAAGGAACATATGCTAAGTGAGGCTAACAGGTCCCTCAGACAAAGGTTGGAAGGGTATCAATTAAATCAACTCCAAATGAATGCTTGTGTTGAAGAAATGGGCTATGGTCGCCATCCAAGTCAAACTCAGGGTGATGGCCTCTATCAACAACTGGACTGTGAGCCAACATTACAAATTGGTTATCAGGCCGATCCAGGGTCAGTGGTTACGGCAGGCCCAAGCATGAGTAATTACATGGGGGGATGGTTACCATAG 540 0.4481 MLKTLERYQKCNYGAPETNVSTREALEFSSQQEYLKLKARYEALQRSQRNLMGEDLGPLSSKELETLERQLDSSLKQIRSTRTQFMLDQLSDLQRKEHMLSEANRSLRQRLEGYQLNQLQMNACVEEMGYGRHPSQTQGDGLYQQLDCEPTLQIGYQADPGSVVTAGPSMSNYMGGWLP 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04477 179 Coils Coil 90 110 - -
Trre8g04477 179 ProSiteProfiles K-box domain profile. 27 122 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre8g04477 179 Pfam K-box region 30 111 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre8g04477 179 Coils Coil 64 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04477 Trre-Chr8 49033077 49036007 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04477 1 179 MADS-box Gene Family AT1G24260 63.043 1.27e-65 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04477 - - gmx:100805078 320.087