Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04475 ATGGGAAGAGGAAGAGTTGAGTTGAAGAGAATTGAAAACAAAATCAACAGACAAGTTACCTTCGCTAAACGTAGGAACGGGCTTTTGAAAAAAGCTTATGAGCTTTCTGTTCTCTGTGATGCTGAAGTTGCTCTTATCATCTTCTCCAATAGAGGAAAATTGTACGAGTTTTGTAGCAGTTCAAGCATGCTCAAAACGCTAGAGAGGTATCAGAAATGCAACTATGGTGCACCTGAGACTAATGTGTCTACACGAGAAGCCTTGGAATTTAGCAGTCAACAGGAATATTTGAAGCTGAAAGCACGTTATGAAGCATTACAACGGTCTCAGAGGAACCTTATGGGAGAAGATCTTGGCCCTCTGAGCAGTAAAGAGCTAGAGACGCTTGAAAGGCAGCTAGATTCTTCCTTGAAGCAAATAAGATCAACAAGGACTCAATTTATGCTGGATCAGCTCTCTGATCTTCAACGCAAGGAACATATGCTAAGTGAGGCTAACAGGTCCCTCAGACAAAGGTTGGAAGGGTATCAATTAAATCAACTCCAAATGAATGCTTGTGTTGAAGAAATGGGCTATGGTCGCCATCCAAGTCAAACTCAGGGTGATGGCCTCTATCAACAACTGGACTGTGAGCCAACATTACAAATTGGTTATCAGGCCGATCCAGGGTCAGTGGTTACGGCAGGCCCAAGCATGAGTAATTACATGGGGGGATGGTTACCATAG 726 0.4325 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPETNVSTREALEFSSQQEYLKLKARYEALQRSQRNLMGEDLGPLSSKELETLERQLDSSLKQIRSTRTQFMLDQLSDLQRKEHMLSEANRSLRQRLEGYQLNQLQMNACVEEMGYGRHPSQTQGDGLYQQLDCEPTLQIGYQADPGSVVTAGPSMSNYMGGWLP 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04475 241 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Trre8g04475 241 ProSiteProfiles K-box domain profile. 89 184 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre8g04475 241 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Trre8g04475 241 FunFam MADS-box transcription factor 7 13 98 - -
Trre8g04475 241 Coils Coil 152 172 - -
Trre8g04475 241 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 167 - -
Trre8g04475 241 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Trre8g04475 241 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
Trre8g04475 241 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Trre8g04475 241 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Trre8g04475 241 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Trre8g04475 241 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Trre8g04475 241 Coils Coil 126 146 - -
Trre8g04475 241 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Trre8g04475 241 Pfam K-box region 92 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre8g04475 241 Gene3D - 13 98 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04475 Trre-Chr8 49033077 49038618 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04475 1 241 MADS-box Gene Family AT1G24260 72.358 1.86e-114 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Trre8g04475 K-box 1.1e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04475 - - gmx:100805078 439.113