Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04473 ATGTACATTTTACAGAATCATGAACAGTATCAGTTCACTCAAGAGCCCCCGCAACTGCCCACAAGTGGTTCCCTGTTTCTGTTTAACAGACGAGTACTGCGTTTCTTCCGTAGAGATGGTCATGCCTGGCGGAAGAAAAGAGATGGAAGAGCTGTAGGAGAAGCCCACGAACGACTGAAGGTTGGAAATGTTGAAGCCATAAATTGTTACTATGCACATGGGGAGCAGAACCCTACTTTCCAGAGGCGGAGCTATTGGATGTTGGACCCGGCATTTGACCATATTGTTCTCGTGCATTACAGAGACACAAGTGAGGGAAGGCTCAGTTCTGGACCTGGTACACAATTGTCACCGGGTTCATCTTCTGCATACAGTCAGAGTCCTAGCTCATATAGTAACCATAACCCGGGGTCAACATCCATTATTGATGATTCATATGAACCTAATCAGAGTTTCTCTAGTCCTGTATCTGCTGAAGTTACCTCTGATAACAATGGAATGAGTCACTCGGAAGGAACAGAAGCAGAATCTGGAACCTCAGCTGACTTTAAGATTACTCAAGCTTTGCGCCGATTGGAGGTTCAGTTAAGTCTGAATGAGGATAACTTCGAAGAAATTGCTCCCTTCCGCAATGAGCATGAAGCTACCCATGATTCAATAGCACAGAACCATCAAGCAGTGATCTGCAAGCAAGAGGAGTCTGCTGCTCTTTCTGGACCAGATGATCAAGGGCTGTTTTATGATGGATATAATGGAGAGCAAGGTGATAATGGTGAAAGTTATCGTGAATTACTAGACCATGATTTCCCTGATGGAAATGAAAAGGCTTTATCTTGGAAAAATGTATACATTCCAGCTGGAAATCAGGAGAATTCACCATCTTCTTCAATGAGGGAGCCAGTTACCAACCTGGAAGACGGTTTCTGGACAAATTTCAACACAAATAATGCTGGAAACTCTGTTTTCTCACTACCTCAAGCTGTTGGTGGAGTCACACTTCCTCCATATTCTTCTGTGGTAGAAACACAAGAAACTCCTTCCGGCTACTATGCGACATTGTTTAACCCAAGCCAAATTGGTGCATCGCATTACGCAGGTTCAAGCTTAACCGTTTCACAAAAACAAAAATTTACCATAAAGGCAGTCTCCCCAGGATGGGGTTATGCCTCTGAGACTACAAAGGTTTACATTATCGGGTCTTTTCTCTGTCATCCTTCCAATTCTGATTGGGCCTGTATGCTTGGTGATGTTGAAGTTCCTGTTGAGATAATTCAGGATGGTGTAATGTGTTGTGAAGTTCCATCTCATATTCCTGGAAAGGTTACTCTGTGCATTACATCTGGAAACCGGGAGTCATGCAGTGAAGTAAGAGAGTTTGAGTATCGTGATAAGACTGAGAGTTGCACCCACTATACTCCATCGGAAACCGAAGCCAGCAGAACTCCAGAAGAGCTGTTATTACTTGTTAGATTTGGGCAAATGCTCCTTTCTGCGTCATCTGTAAGTAATGATAACAACGAATCGGGAATTTTCATAAAACAGAAAGCTGATGATAATTCATGGAGCCATATTATAGAGGCTCTTCTATTTGGCAGTGGAACTTCTTCTGGCACTACCAATTGGCTTCTTGAAGAGCTTCTAAAGGATAAGCTACAGGTGTGGCTTACGTGTAGATCCCGGGAAATAGATGAAGAGACGGGCTGTTCTTTGTCCAAGAAAGAGCAAGGGATTATTCACATGGTTGCTGGGTTGGGTTTTGAGTGGGCCTTGAACCCTATTCTCAGTTGTGGTGTGAATATTAATTTCCGTGACATCAATGGGTGGACTGCCCTTCATTGGGCTGCACGTTTTGGAAGAGAAAAAATGGTTGCGTCGCTTATCGCTTCTGGTGCATCTGCTGGAGCTGTGACAGATCCAAGTGCACAAGATCCAACTGGTAAAACTGCAGCATCAATTGCATCTAGCAGTGGGCATAAGGGACTCGCAGGGTATCTTTCAGAGGTAGCTCTAACAAGTCATCTGTCATCGCTTACACTGAAAGAGAGTGAGCTTTCTAAAAGTTCTGCGGAGCTTCAAGCAGATTTAACTGTTAGTAATGTCTCCAAGGAAAATATTGCTTTCAGTGAGGATCGGGCCTCGCTTAAAGATACCTTAGCTGCTGTCAGAAATACAACTCAGGCAGCTGCACGGATACAAGCTGCTTTTCGTTCACATTCATTTAGAAAACGGAGAGCAAAAGAAACAAATGCGGTTATGAGTGGACATGATATCAGTGCAAGTAGCATTGGTGACATGCCAGAGCTTTATGCTATGTCAAAACTTGCCTTTCGGAACTCGCGTGATAATAATTCAGCTGCATTATCAATTCAGAAGAAATATCGAGGTTGGAAAGGTCGCAAAGATTTCCTATCATTGCGCCAAAAAGTAGTGAAGATACAGGCTCATGTGAGGGGTTACCAAGTTAGGAAGCATTACAAAGTATTATGGGCAGTTGGAATCTTGGACAAGGTTGTGCTAAGATGGCGTAGAAAAGGAGTTGGTTTACGAGGTTTCAAACCAGAAGTGGAGGTTAATGAAAATGAAGATGATGAAGATGAAGATATTCTCAAGGTGTTCCGAAAACAGAAAGTAGATGGTGAAATTGACAAGGCTGTCTCAAGGGTGCTGTCCATGGTCAAATCTCCTGATGCTCGCGAGCAATATCATCGCATGCTTGAGAAGTATCGTCAAGCCAAGGCTGAACTTGCACAAACGAGTGAAGAAAAATCGTTAACAACTTCTATAGAAGATTATTTGAACATGGATGATGATTCTTATTAA 2820 0.4312 MYILQNHEQYQFTQEPPQLPTSGSLFLFNRRVLRFFRRDGHAWRKKRDGRAVGEAHERLKVGNVEAINCYYAHGEQNPTFQRRSYWMLDPAFDHIVLVHYRDTSEGRLSSGPGTQLSPGSSSAYSQSPSSYSNHNPGSTSIIDDSYEPNQSFSSPVSAEVTSDNNGMSHSEGTEAESGTSADFKITQALRRLEVQLSLNEDNFEEIAPFRNEHEATHDSIAQNHQAVICKQEESAALSGPDDQGLFYDGYNGEQGDNGESYRELLDHDFPDGNEKALSWKNVYIPAGNQENSPSSSMREPVTNLEDGFWTNFNTNNAGNSVFSLPQAVGGVTLPPYSSVVETQETPSGYYATLFNPSQIGASHYAGSSLTVSQKQKFTIKAVSPGWGYASETTKVYIIGSFLCHPSNSDWACMLGDVEVPVEIIQDGVMCCEVPSHIPGKVTLCITSGNRESCSEVREFEYRDKTESCTHYTPSETEASRTPEELLLLVRFGQMLLSASSVSNDNNESGIFIKQKADDNSWSHIIEALLFGSGTSSGTTNWLLEELLKDKLQVWLTCRSREIDEETGCSLSKKEQGIIHMVAGLGFEWALNPILSCGVNINFRDINGWTALHWAARFGREKMVASLIASGASAGAVTDPSAQDPTGKTAASIASSSGHKGLAGYLSEVALTSHLSSLTLKESELSKSSAELQADLTVSNVSKENIAFSEDRASLKDTLAAVRNTTQAAARIQAAFRSHSFRKRRAKETNAVMSGHDISASSIGDMPELYAMSKLAFRNSRDNNSAALSIQKKYRGWKGRKDFLSLRQKVVKIQAHVRGYQVRKHYKVLWAVGILDKVVLRWRRKGVGLRGFKPEVEVNENEDDEDEDILKVFRKQKVDGEIDKAVSRVLSMVKSPDAREQYHRMLEKYRQAKAELAQTSEEKSLTTSIEDYLNMDDDSY 939
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04473 939 ProSiteProfiles Ankyrin repeat profile. 606 638 IPR002110 GO:0005515
Trre8g04473 939 Pfam IPT/TIG domain 378 461 IPR002909 -
Trre8g04473 939 ProSiteProfiles Ankyrin repeat region circular profile. 606 632 - -
Trre8g04473 939 MobiDBLite consensus disorder prediction 107 181 - -
Trre8g04473 939 SUPERFAMILY Ankyrin repeat 575 667 IPR036770 -
Trre8g04473 939 CDD IPT 378 463 - -
Trre8g04473 939 Gene3D Immunoglobulins 371 467 IPR013783 -
Trre8g04473 939 Pfam IQ calmodulin-binding motif 807 826 IPR000048 GO:0005515
Trre8g04473 939 Pfam IQ calmodulin-binding motif 784 802 IPR000048 GO:0005515
Trre8g04473 939 ProSiteProfiles IQ motif profile. 724 753 IPR000048 GO:0005515
Trre8g04473 939 FunFam Calmodulin-binding transcription activator 2 372 466 - -
Trre8g04473 939 FunFam Calmodulin-binding transcription activator 4 isoform A 489 671 - -
Trre8g04473 939 SMART ANK_2a 606 635 IPR002110 GO:0005515
Trre8g04473 939 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 771 829 IPR027417 -
Trre8g04473 939 Coils Coil 898 921 - -
Trre8g04473 939 FunFam Calmodulin-binding transcription activator 2 781 829 - -
Trre8g04473 939 SUPERFAMILY E set domains 378 462 IPR014756 -
Trre8g04473 939 ProSiteProfiles IQ motif profile. 805 830 IPR000048 GO:0005515
Trre8g04473 939 MobiDBLite consensus disorder prediction 104 181 - -
Trre8g04473 939 MobiDBLite consensus disorder prediction 915 939 - -
Trre8g04473 939 Pfam Ankyrin repeats (3 copies) 588 666 IPR002110 GO:0005515
Trre8g04473 939 MobiDBLite consensus disorder prediction 917 933 - -
Trre8g04473 939 ProSiteProfiles CG-1 DNA-binding domain profile. 1 109 IPR005559 GO:0003677
Trre8g04473 939 Gene3D - 782 830 - -
Trre8g04473 939 Gene3D - 490 671 IPR036770 -
Trre8g04473 939 SMART CG_1_2 1 104 IPR005559 GO:0003677
Trre8g04473 939 SMART iq_5 723 745 IPR000048 GO:0005515
Trre8g04473 939 SMART iq_5 804 826 IPR000048 GO:0005515
Trre8g04473 939 SMART iq_5 781 803 IPR000048 GO:0005515
Trre8g04473 939 Pfam CG-1 domain 2 102 IPR005559 GO:0003677
Trre8g04473 939 ProSiteProfiles IQ motif profile. 782 811 IPR000048 GO:0005515
Trre8g04473 939 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 2 914 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04473 Trre-Chr8 48989947 48996835 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04473 1 918 CAMTA Transcription Factor Family AT1G67310 51.610 0.0 860
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Trre8g04473 CG-1 1.3e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04473 K21596 - gmx:100786880 1400.19