Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04472 ATGTACATTTTACAGAATCATGAACAGTATCAGTTCACTCAAGAGCCCCCGCAACTGCCCACAAGTGGTTCCCTGTTTCTGTTTAACAGACGAGTACTGCGTTTCTTCCGTAGAGATGGTCATGCCTGGCGGAAGAAAAGAGATGGAAGAGCTGTAGGAGAAGCCCACGAACGACTGAAGGTTGGAAATGTTGAAGCCATAAATTGTTACTATGCACATGGGGAGCAGAACCCTACTTTCCAGAGGCGGAGCTATTGGATGTTGGACCCGGCATTTGACCATATTGTTCTCGTGCATTACAGAGACACAAGTGAGGGAAGGCTCAGTTCTGGACCTGGTACACAATTGTCACCGGGTTCATCTTCTGCATACAGTCAGAGTCCTAGCTCATATAGTAACCATAACCCGGGGTCAACATCCATTATTGATGATTCATATGAACCTAATCAGAGTTTCTCTAGTCCTGTATCTGCTGAAGTTACCTCTGATAACAATGGAATGAGTCACTCGGAAGGAACAGAAGCAGAATCTGGAACCTCAGCTGACTTTAAGATTACTCAAGCTTTGCGCCGATTGGAGGTTCAGTTAAGTCTGAATGAGGATAACTTCGAAGAAATTGCTCCCTTCCGCAATGAGCATGAAGCTACCCATGATTCAATAGCACAGAACCATCAAGCAGTGATCTGCAAGCAAGAGGAGTCTGCTGCTCTTTCTGGACCAGATGATCAAGGGCTGTTTTATGATGGATATAATGGAGAGCAAGGTGATAATGGTGAAAGTTATCGTGAATTACTAGACCATGATTTCCCTGATGGAAATGAAAAGGCTTTATCTTGGAAAAATGTATACATTCCAGCTGGAAATGAGAATTCACCATCTTCTTCAATGAGGGAGCCAGTTACCAACCTGGAAGACGGTTTCTGGACAAATTTCAACACAAATAATGCTGGAAACTCTGTTTTCTCACTACCTCAAGCTGTTGGTGGAGTCACACTTCCTCCATATTCTTCTGTGGTAGAAACACAAGAAACTCCTTCCGGCTACTATGCGACATTGTTTAACCCAAGCCAAATTGGTGCATCGCATTACGCAGGTTCAAGCTTAACCGTTTCACAAAAACAAAAATTTACCATAAAGGCAGTCTCCCCAGGATGGGGTTATGCCTCTGAGACTACAAAGGTTTACATTATCGGGTCTTTTCTCTGTCATCCTTCCAATTCTGATTGGGCCTGTATGCTTGGTGATGTTGAAGTTCCTGTTGAGATAATTCAGGATGGTGTAATGTGTTGTGAAGTTCCATCTCATATTCCTGGAAAGGTTACTCTGTGCATTACATCTGGAAACCGGGAGTCATGCAGTGAAGTAAGAGAGTTTGAGTATCGTGATAAGACTGAGAGTTGCACCCACTATACTCCATCGGAAACCGAAGCCAGCAGAACTCCAGAAGAGCTGTTATTACTTGTTAGATTTGGGCAAATGCTCCTTTCTGCGTCATCTGTAAGTAATGATAACAACGAATCGGGAATTTTCATAAAACAGAAAGCTGATGATAATTCATGGAGCCATATTATAGAGGCTCTTCTATTTGGCAGTGGAACTTCTTCTGGCACTACCAATTGGCTTCTTGAAGAGCTTCTAAAGGATAAGCTACAGGTGTGGCTTACGTGTAGATCCCGGGAAATAGATGAAGAGACGGGCTGTTCTTTGTCCAAGAAAGAGCAAGGGATTATTCACATGGTTGCTGGGTTGGGTTTTGAGTGGGCCTTGAACCCTATTCTCAGTTGTGGTGTGAATATTAATTTCCGTGACATCAATGGGTGGACTGCCCTTCATTGGGCTGCACGTTTTGGAAGAGAAAAAATGGTTGCGTCGCTTATCGCTTCTGGTGCATCTGCTGGAGCTGTGACAGATCCAAGTGCACAAGATCCAACTGGTAAAACTGCAGCATCAATTGCATCTAGCAGTGGGCATAAGGGACTCGCAGGGTATCTTTCAGAGGTAGCTCTAACAAGTCATCTGTCATCGCTTACACTGAAAGAGAGTGAGCTTTCTAAAAGTTCTGCGGAGCTTCAAGCAGATTTAACTGTTAGTAATGTCTCCAAGGAAAATATTGCTTTCAGTGAGGATCGGGCCTCGCTTAAAGATACCTTAGCTGCTGTCAGAAATACAACTCAGGCAGCTGCACGGATACAAGCTGCTTTTCGTTCACATTCATTTAGAAAACGGAGAGCAAAAGAAACAAATGCGGTTATGAGTGGACATGATATCAGTGCAAGTAGCATTGGTGACATGCCAGAGCTTTATGCTATGTCAAAACTTGCCTTTCGGAACTCGCGTGATAATAATTCAGCTGCATTATCAATTCAGAAGAAATATCGAGGTTGGAAAGGTCGCAAAGATTTCCTATCATTGCGCCAAAAAGTAGTGAAGATACAGGCTCATGTGAGGGGTTACCAAGTTAGGAAGCATTACAAAGTATTATGGGCAGTTGGAATCTTGGACAAGGTTGTGCTAAGATGGCGTAGAAAAGGAGTTGGTTTACGAGGTTTCAAACCAGAAGTGGAGGTTAATGAAAATGAAGATGATGAAGATGAAGATATTCTCAAGGTGTTCCGAAAACAGAAAGTAGATGGTGAAATTGACAAGGCTGTCTCAAGGGTGCTGTCCATGGTCAAATCTCCTGATGCTCGCGAGCAATATCATCGCATGCTTGAGAAGTATCGTCAAGCCAAGGCTGAACTTGCACAAACGAGTGAAGAAAAATCGTTAACAACTTCTATAGAAGATTATTTGAACATGGATGATGATTCTTATTAA 2817 0.431 MYILQNHEQYQFTQEPPQLPTSGSLFLFNRRVLRFFRRDGHAWRKKRDGRAVGEAHERLKVGNVEAINCYYAHGEQNPTFQRRSYWMLDPAFDHIVLVHYRDTSEGRLSSGPGTQLSPGSSSAYSQSPSSYSNHNPGSTSIIDDSYEPNQSFSSPVSAEVTSDNNGMSHSEGTEAESGTSADFKITQALRRLEVQLSLNEDNFEEIAPFRNEHEATHDSIAQNHQAVICKQEESAALSGPDDQGLFYDGYNGEQGDNGESYRELLDHDFPDGNEKALSWKNVYIPAGNENSPSSSMREPVTNLEDGFWTNFNTNNAGNSVFSLPQAVGGVTLPPYSSVVETQETPSGYYATLFNPSQIGASHYAGSSLTVSQKQKFTIKAVSPGWGYASETTKVYIIGSFLCHPSNSDWACMLGDVEVPVEIIQDGVMCCEVPSHIPGKVTLCITSGNRESCSEVREFEYRDKTESCTHYTPSETEASRTPEELLLLVRFGQMLLSASSVSNDNNESGIFIKQKADDNSWSHIIEALLFGSGTSSGTTNWLLEELLKDKLQVWLTCRSREIDEETGCSLSKKEQGIIHMVAGLGFEWALNPILSCGVNINFRDINGWTALHWAARFGREKMVASLIASGASAGAVTDPSAQDPTGKTAASIASSSGHKGLAGYLSEVALTSHLSSLTLKESELSKSSAELQADLTVSNVSKENIAFSEDRASLKDTLAAVRNTTQAAARIQAAFRSHSFRKRRAKETNAVMSGHDISASSIGDMPELYAMSKLAFRNSRDNNSAALSIQKKYRGWKGRKDFLSLRQKVVKIQAHVRGYQVRKHYKVLWAVGILDKVVLRWRRKGVGLRGFKPEVEVNENEDDEDEDILKVFRKQKVDGEIDKAVSRVLSMVKSPDAREQYHRMLEKYRQAKAELAQTSEEKSLTTSIEDYLNMDDDSY 938
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04472 938 MobiDBLite consensus disorder prediction 107 181 - -
Trre8g04472 938 ProSiteProfiles IQ motif profile. 723 752 IPR000048 GO:0005515
Trre8g04472 938 ProSiteProfiles Ankyrin repeat profile. 605 637 IPR002110 GO:0005515
Trre8g04472 938 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 2 913 - -
Trre8g04472 938 SUPERFAMILY Ankyrin repeat 574 666 IPR036770 -
Trre8g04472 938 MobiDBLite consensus disorder prediction 914 938 - -
Trre8g04472 938 Pfam IQ calmodulin-binding motif 783 801 IPR000048 GO:0005515
Trre8g04472 938 Pfam IQ calmodulin-binding motif 806 825 IPR000048 GO:0005515
Trre8g04472 938 ProSiteProfiles IQ motif profile. 804 829 IPR000048 GO:0005515
Trre8g04472 938 ProSiteProfiles Ankyrin repeat region circular profile. 605 631 - -
Trre8g04472 938 Pfam Ankyrin repeats (3 copies) 587 665 IPR002110 GO:0005515
Trre8g04472 938 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 770 828 IPR027417 -
Trre8g04472 938 CDD IPT 377 462 - -
Trre8g04472 938 SUPERFAMILY E set domains 377 461 IPR014756 -
Trre8g04472 938 FunFam Calmodulin-binding transcription activator 2 371 465 - -
Trre8g04472 938 MobiDBLite consensus disorder prediction 104 181 - -
Trre8g04472 938 Pfam IPT/TIG domain 377 460 IPR002909 -
Trre8g04472 938 SMART ANK_2a 605 634 IPR002110 GO:0005515
Trre8g04472 938 Gene3D - 781 829 - -
Trre8g04472 938 Gene3D Immunoglobulins 370 466 IPR013783 -
Trre8g04472 938 ProSiteProfiles CG-1 DNA-binding domain profile. 1 109 IPR005559 GO:0003677
Trre8g04472 938 SMART iq_5 803 825 IPR000048 GO:0005515
Trre8g04472 938 SMART iq_5 722 744 IPR000048 GO:0005515
Trre8g04472 938 SMART iq_5 780 802 IPR000048 GO:0005515
Trre8g04472 938 FunFam Calmodulin-binding transcription activator 2 780 828 - -
Trre8g04472 938 SMART CG_1_2 1 104 IPR005559 GO:0003677
Trre8g04472 938 ProSiteProfiles IQ motif profile. 781 810 IPR000048 GO:0005515
Trre8g04472 938 MobiDBLite consensus disorder prediction 916 932 - -
Trre8g04472 938 Coils Coil 897 920 - -
Trre8g04472 938 Gene3D - 489 670 IPR036770 -
Trre8g04472 938 Pfam CG-1 domain 2 102 IPR005559 GO:0003677
Trre8g04472 938 FunFam Calmodulin-binding transcription activator 4 isoform A 488 670 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04472 Trre-Chr8 48989947 48996835 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04472 1 917 CAMTA Transcription Factor Family AT1G67310 51.817 0.0 860
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Trre8g04472 CG-1 1.3e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04472 K21596 - gmx:100786880 1396.33