Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04470 ATGGCAATATCTATTGGTTTCGACTACAATATTAATGATTTGTATCAAGAAGCTCAAAGGAGATGGTTGAAGCCTGCAGAGGTGATGTACATTTTACAGAATCATGAACAGTATCAGTTCACTCAAGAGCCCCCGCAACTGCCCACAAGTGGTTCCCTGTTTCTGTTTAACAGACGAGTACTGCGTTTCTTCCGTAGAGATGGTCATGCCTGGCGGAAGAAAAGAGATGGAAGAGCTGTAGGAGAAGCCCACGAACGACTGAAGGTTGGAAATGTTGAAGCCATAAATTGTTACTATGCACATGGGGAGCAGAACCCTACTTTCCAGAGGCGGAGCTATTGGATGTTGGACCCGGCATTTGACCATATTGTTCTCGTGCATTACAGAGACACAAGTGAGGGAAGGCTCAGTTCTGGACCTGGTACACAATTGTCACCGGGTTCATCTTCTGCATACAGTCAGAGTCCTAGCTCATATAGTAACCATAACCCGGGGTCAACATCCATTATTGATGATTCATATGAACCTAATCAGAGTTTCTCTAGTCCTGTATCTGCTGAAGTTACCTCTGATAACAATGGAATGAGTCACTCGGAAGGAACAGAAGCAGAATCTGGAACCTCAGCTGACTTTAAGATTACTCAAGCTTTGCGCCGATTGGAGGTTCAGTTAAGTCTGAATGAGGATAACTTCGAAGAAATTGCTCCCTTCCGCAATGAGCATGAAGCTACCCATGATTCAATAGCACAGAACCATCAAGCAGTGATCTGCAAGCAAGAGGAGTCTGCTGCTCTTTCTGGACCAGATGATCAAGGGCTGTTTTATGATGGATATAATGGAGAGCAAGGTGATAATGGTGAAAGTTATCGTGAATTACTAGACCATGATTTCCCTGATGGAAATGAAAAGGCTTTATCTTGGAAAAATGTATACATTCCAGCTGGAAATGAGAATTCACCATCTTCTTCAATGAGGGAGCCAGTTACCAACCTGGAAGACGGTTTCTGGACAAATTTCAACACAAATAATGCTGGAAACTCTGTTTTCTCACTACCTCAAGCTGTTGGTGGAGTCACACTTCCTCCATATTCTTCTGTGGTAGAAACACAAGAAACTCCTTCCGGCTACTATGCGACATTGTTTAACCCAAGCCAAATTGGTGCATCGCATTACGCAGGTTCAAGCTTAACCGTTTCACAAAAACAAAAATTTACCATAAAGGCAGTCTCCCCAGGATGGGGTTATGCCTCTGAGACTACAAAGGTTTACATTATCGGGTCTTTTCTCTGTCATCCTTCCAATTCTGATTGGGCCTGTATGCTTGGTGATGTTGAAGTTCCTGTTGAGATAATTCAGGATGGTGTAATGTGTTGTGAAGTTCCATCTCATATTCCTGGAAAGGTTACTCTGTGCATTACATCTGGAAACCGGGAGTCATGCAGTGAAGTAAGAGAGTTTGAGTATCGTGATAAGACTGAGAGTTGCACCCACTATACTCCATCGGAAACCGAAGCCAGCAGAACTCCAGAAGAGCTGTTATTACTTGTTAGATTTGGGCAAATGCTCCTTTCTGCGTCATCTGTAAGTAATGATAACAACGAATCGGGAATTTTCATAAAACAGAAAGCTGATGATAATTCATGGAGCCATATTATAGAGGCTCTTCTATTTGGCAGTGGAACTTCTTCTGGCACTACCAATTGGCTTCTTGAAGAGCTTCTAAAGGATAAGCTACAGGTGTGGCTTACGTGTAGATCCCGGGAAATAGATGAAGAGACGGGCTGTTCTTTGTCCAAGAAAGAGCAAGGGATTATTCACATGGTTGCTGGGTTGGGTTTTGAGTGGGCCTTGAACCCTATTCTCAGTTGTGGTGTGAATATTAATTTCCGTGACATCAATGGGTGGACTGCCCTTCATTGGGCTGCACGTTTTGGAAGAGAAAAAATGGTTGCGTCGCTTATCGCTTCTGGTGCATCTGCTGGAGCTGTGACAGATCCAAGTGCACAAGATCCAACTGGTAAAACTGCAGCATCAATTGCATCTAGCAGTGGGCATAAGGGACTCGCAGGGTATCTTTCAGAGGTAGCTCTAACAAGTCATCTGTCATCGCTTACACTGAAAGAGAGTGAGCTTTCTAAAAGTTCTGCGGAGCTTCAAGCAGATTTAACTGTTAGTAATGTCTCCAAGGAAAATATTGCTTTCAGTGAGGATCGGGCCTCGCTTAAAGATACCTTAGCTGCTGTCAGAAATACAACTCAGGCAGCTGCACGGATACAAGCTGCTTTTCGTTCACATTCATTTAGAAAACGGAGAGCAAAAGAAACAAATGCGGTTATGAGTGGACATGATATCAGTGCAAGTAGCATTGGTGACATGCCAGAGCTTTATGCTATGTCAAAACTTGCCTTTCGGAACTCGCGTGATAATAATTCAGCTGCATTATCAATTCAGAAGAAATATCGAGGTTGGAAAGGTCGCAAAGATTTCCTATCATTGCGCCAAAAAGTAGTGAAGATACAGGCTCATGTGAGGGGTTACCAAGTTAGGAAGCATTACAAAGTATTATGGGCAGTTGGAATCTTGGACAAGGTTGTGCTAAGATGGCGTAGAAAAGGAGTTGGTTTACGAGGTTTCAAACCAGAAGTGGAGGTTAATGAAAATGAAGATGATGAAGATGAAGATATTCTCAAGGTGTTCCGAAAACAGAAAGTAGATGGTGAAATTGACAAGGCTGTCTCAAGGGTGCTGTCCATGGTCAAATCTCCTGATGCTCGCGAGCAATATCATCGCATGCTTGAGAAGTATCGTCAAGCCAAGGCTGAACTTGCACAAACGAGTGAAGAAAAATCGTTAACAACTTCTATAGAAGATTATTTGAACATGGATGATGATTCTTATTAA 2901 0.4295 MAISIGFDYNINDLYQEAQRRWLKPAEVMYILQNHEQYQFTQEPPQLPTSGSLFLFNRRVLRFFRRDGHAWRKKRDGRAVGEAHERLKVGNVEAINCYYAHGEQNPTFQRRSYWMLDPAFDHIVLVHYRDTSEGRLSSGPGTQLSPGSSSAYSQSPSSYSNHNPGSTSIIDDSYEPNQSFSSPVSAEVTSDNNGMSHSEGTEAESGTSADFKITQALRRLEVQLSLNEDNFEEIAPFRNEHEATHDSIAQNHQAVICKQEESAALSGPDDQGLFYDGYNGEQGDNGESYRELLDHDFPDGNEKALSWKNVYIPAGNENSPSSSMREPVTNLEDGFWTNFNTNNAGNSVFSLPQAVGGVTLPPYSSVVETQETPSGYYATLFNPSQIGASHYAGSSLTVSQKQKFTIKAVSPGWGYASETTKVYIIGSFLCHPSNSDWACMLGDVEVPVEIIQDGVMCCEVPSHIPGKVTLCITSGNRESCSEVREFEYRDKTESCTHYTPSETEASRTPEELLLLVRFGQMLLSASSVSNDNNESGIFIKQKADDNSWSHIIEALLFGSGTSSGTTNWLLEELLKDKLQVWLTCRSREIDEETGCSLSKKEQGIIHMVAGLGFEWALNPILSCGVNINFRDINGWTALHWAARFGREKMVASLIASGASAGAVTDPSAQDPTGKTAASIASSSGHKGLAGYLSEVALTSHLSSLTLKESELSKSSAELQADLTVSNVSKENIAFSEDRASLKDTLAAVRNTTQAAARIQAAFRSHSFRKRRAKETNAVMSGHDISASSIGDMPELYAMSKLAFRNSRDNNSAALSIQKKYRGWKGRKDFLSLRQKVVKIQAHVRGYQVRKHYKVLWAVGILDKVVLRWRRKGVGLRGFKPEVEVNENEDDEDEDILKVFRKQKVDGEIDKAVSRVLSMVKSPDAREQYHRMLEKYRQAKAELAQTSEEKSLTTSIEDYLNMDDDSY 966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04470 966 MobiDBLite consensus disorder prediction 132 209 - -
Trre8g04470 966 FunFam Calmodulin-binding transcription activator 2 808 856 - -
Trre8g04470 966 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 798 856 IPR027417 -
Trre8g04470 966 FunFam Calmodulin-binding transcription activator 4 isoform A 516 698 - -
Trre8g04470 966 ProSiteProfiles CG-1 DNA-binding domain profile. 11 137 IPR005559 GO:0003677
Trre8g04470 966 SMART ANK_2a 633 662 IPR002110 GO:0005515
Trre8g04470 966 FunFam Calmodulin-binding transcription activator 2 399 493 - -
Trre8g04470 966 MobiDBLite consensus disorder prediction 944 960 - -
Trre8g04470 966 Coils Coil 925 948 - -
Trre8g04470 966 Pfam IPT/TIG domain 405 488 IPR002909 -
Trre8g04470 966 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 10 941 - -
Trre8g04470 966 ProSiteProfiles IQ motif profile. 809 838 IPR000048 GO:0005515
Trre8g04470 966 Pfam Ankyrin repeats (3 copies) 615 693 IPR002110 GO:0005515
Trre8g04470 966 SMART iq_5 831 853 IPR000048 GO:0005515
Trre8g04470 966 SMART iq_5 750 772 IPR000048 GO:0005515
Trre8g04470 966 SMART iq_5 808 830 IPR000048 GO:0005515
Trre8g04470 966 SUPERFAMILY E set domains 405 489 IPR014756 -
Trre8g04470 966 MobiDBLite consensus disorder prediction 942 966 - -
Trre8g04470 966 MobiDBLite consensus disorder prediction 135 209 - -
Trre8g04470 966 Pfam CG-1 domain 17 130 IPR005559 GO:0003677
Trre8g04470 966 ProSiteProfiles IQ motif profile. 751 780 IPR000048 GO:0005515
Trre8g04470 966 CDD IPT 405 490 - -
Trre8g04470 966 ProSiteProfiles Ankyrin repeat profile. 633 665 IPR002110 GO:0005515
Trre8g04470 966 ProSiteProfiles Ankyrin repeat region circular profile. 633 659 - -
Trre8g04470 966 Gene3D Immunoglobulins 398 494 IPR013783 -
Trre8g04470 966 SMART CG_1_2 14 132 IPR005559 GO:0003677
Trre8g04470 966 Gene3D - 809 857 - -
Trre8g04470 966 Gene3D - 518 698 IPR036770 -
Trre8g04470 966 SUPERFAMILY Ankyrin repeat 602 694 IPR036770 -
Trre8g04470 966 ProSiteProfiles IQ motif profile. 832 857 IPR000048 GO:0005515
Trre8g04470 966 Pfam IQ calmodulin-binding motif 834 853 IPR000048 GO:0005515
Trre8g04470 966 Pfam IQ calmodulin-binding motif 811 829 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04470 Trre-Chr8 48989947 48997282 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04470 7 945 CAMTA Transcription Factor Family AT1G67310 52.183 0.0 892
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Trre8g04470 CG-1 7.7e-48 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04470 K21596 - gmx:100786880 1436.4