Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04465 ATGGACTGGAATGCAAAACCACCAAGCTGGATGATCGAATTAGATCGAGAAAACAATGTTGGGCTGTTCGATGCGCTTGGTGGAAGTGGTTGTTCTGGCTCTGACCTAATTCTCGGTTCTACATCAAGGAGTTCAAAATCAGCTTCAATTGGTTCATCATCAAATAGGGACAGTAGAACAAAAGAATATCCGATTGAAAGTTCTCATGCACCGGAGCTTTCTTCTGTCTCTGGTGAACCATTGCTCACTCTAAGACTCGGTAAAAGAATGTACTTTGAGGATGTATGTCCCGAAAGTGATTCCGAATACCTATCCTATTCAAGGGATCTCGTGCCATCTTTACGTGTTGGAAAGAAATGTAAGTCCAATGGTCAGAACTTACAATCTCCACGCTGCCAGGTTGAAGGTTGTGGCCTTGACCTTTCATCGGCTAAAAATTATCATCGCAAACATAGAGTTTGTGAAATTCATTCCAAATCTCCTAAGGTGGTTGTAGCTGGCTTGGAATGCCGGTTTTGCCAGCAATGTAGCAGGTTCCATAATCTGTTTGAATTCGATGAAGAAAAGAGAAGCTGCAGACTACGTCTTTCGCATCACAATGCAAGGCGTCGTAAATATCGTCCTACCAATGCTGTCCAGTCACGTCAATCATCTTTGATTTCCTCACGACGTGATGGGAAGCAACAGATGAATCCTGTTGCTTATTCAAAGACTAATATAAATTTAGCCTTGAAAAACATACGCAACAACAAGCTCCCCCAAACAAAAGATTTTCTCTTGAAGCCTTCAAAATACAACGCCGACATACCAAGTTCCCTCGCTATGCTTTCTGATGATTCCGATGTCCATTTTACATGCAAAGCCCTTGAACACAAGAGTATCAGTCCAGGTGTAGAAGATTTCCTTACCTTTTCTGATACGAATGCTACACAAGACTTTACTTGTGCTCTCTCTCTTCTGTCAACCAATCCGTGGGATTCATATGCAACTAAATCCATTTCTCTAGAACATTCTAATCGCACAACCAGTAATGCTCAAGCCATATCGCATGCAATGAATCTGCGCATGCCTCGTGCTTCATCAGAATCATGGTATGGTGATCATGATCAACATGTCAATTCAAGTATGTGGATCTCAAACTCAAACTGTGAAGATAGCAGTCACTTTCAAGAATTTCAACTGTTCAGAGAACCTTATGAGTCTGGTTTTCACCAGATGGATTAA 1224 0.4167 MDWNAKPPSWMIELDRENNVGLFDALGGSGCSGSDLILGSTSRSSKSASIGSSSNRDSRTKEYPIESSHAPELSSVSGEPLLTLRLGKRMYFEDVCPESDSEYLSYSRDLVPSLRVGKKCKSNGQNLQSPRCQVEGCGLDLSSAKNYHRKHRVCEIHSKSPKVVVAGLECRFCQQCSRFHNLFEFDEEKRSCRLRLSHHNARRRKYRPTNAVQSRQSSLISSRRDGKQQMNPVAYSKTNINLALKNIRNNKLPQTKDFLLKPSKYNADIPSSLAMLSDDSDVHFTCKALEHKSISPGVEDFLTFSDTNATQDFTCALSLLSTNPWDSYATKSISLEHSNRTTSNAQAISHAMNLRMPRASSESWYGDHDQHVNSSMWISNSNCEDSSHFQEFQLFREPYESGFHQMD 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04465 407 ProSiteProfiles Zinc finger SBP-type profile. 129 206 IPR004333 GO:0003677
Trre8g04465 407 MobiDBLite consensus disorder prediction 40 74 - -
Trre8g04465 407 MobiDBLite consensus disorder prediction 40 58 - -
Trre8g04465 407 Pfam SBP domain 132 205 IPR004333 GO:0003677
Trre8g04465 407 SUPERFAMILY SBT domain 130 209 IPR036893 GO:0003677|GO:0005634
Trre8g04465 407 FunFam Squamosa promoter-binding-like protein 14 123 193 - -
Trre8g04465 407 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 43 361 IPR044817 GO:0003677
Trre8g04465 407 MobiDBLite consensus disorder prediction 210 228 - -
Trre8g04465 407 MobiDBLite consensus disorder prediction 203 228 - -
Trre8g04465 407 Gene3D - 122 193 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04465 Trre-Chr8 48965571 48967575 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04465 65 205 SBP-box Gene Family AT1G27370 60.563 7.60e-50 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Trre8g04465 SBP 8.6e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04465 - - mtr:25501754 437.187