Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04452 ATGACTAAGTACTCAAGAGAGCCTGATAACCCTACCAAGTCTACTAAGGCACGAGGTGCAGATCTTAGAGTTCATTTCAAGAACACTAGGGAAACAGCGTTCGCCATCAGGAAGTTGCCCTTGACCAAGGCCAAAAGGTACTTGGAGGACGTTCTTGCACACAAACAAGCCATTCCATTCAGACGTTTCTGCCGCGGTGTTGGGAGGACTGCCCAGGCGAAGAATAGACACTCTAATGGACAGGGAAGGTGGCCCGCCAAGTCTGCAAAGTTCATCCTTGACTTGCTCAAGAATGCTGAGAGCAATGCTGAAGTGAAAGGTTTGGATGTTGATGCCTTATATGTATCTCATATCCAAGTCAATCAAGCACAGAAGCAAAGACGCCGAACATACAGAGCCCATGGAAGAATCAACCCTTACATGTCATCTCCCTGCCACATTGAGTTGATTTTATCCGAAAAGGAAGAGGCAGTCAGGAAGGAGCCCGAGTCCCAGTTGGCAACCAGCAAGAAGGCTTAA 519 0.4798 MTKYSREPDNPTKSTKARGADLRVHFKNTRETAFAIRKLPLTKAKRYLEDVLAHKQAIPFRRFCRGVGRTAQAKNRHSNGQGRWPAKSAKFILDLLKNAESNAEVKGLDVDALYVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEAVRKEPESQLATSKKA 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04452 172 ProSitePatterns Ribosomal protein L22 signature. 127 151 IPR018260 GO:0003735|GO:0005840|GO:0006412
Trre8g04452 172 NCBIfam 50S ribosomal protein L22 4 154 IPR005721 GO:0003735|GO:0006412|GO:0015934
Trre8g04452 172 PANTHER 60S RIBOSOMAL PROTEIN L17 1 171 IPR005721 GO:0003735|GO:0006412|GO:0015934
Trre8g04452 172 SUPERFAMILY Ribosomal protein L22 1 154 IPR036394 GO:0003735|GO:0005840|GO:0006412
Trre8g04452 172 Hamap 50S ribosomal protein L22 [rplV]. 2 154 IPR005721 GO:0003735|GO:0006412|GO:0015934
Trre8g04452 172 Pfam Ribosomal protein L22p/L17e 17 152 IPR001063 GO:0003735|GO:0005840|GO:0006412
Trre8g04452 172 CDD Ribosomal_L22 16 151 IPR001063 GO:0003735|GO:0005840|GO:0006412
Trre8g04452 172 FunFam 60S ribosomal protein L17 1 172 - -
Trre8g04452 172 Gene3D Ribosomal protein L22/L17 1 172 IPR036394 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04452 Trre-Chr8 48772032 48776465 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04452 1 171 Cytoplasmic Ribosomal Protein Gene Family AT1G27400 88.304 1.61e-114 320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04452 K02880 - gmx:100499784 330.872