Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04442 ATGGATGCTGCTGAGGTTGAAGAAAATCTATTTGCTGTTAGTGATGCCAAGTTACATGGACAAATGTGCAAGGCTCTTTCTATAATATATTGCAAAGTATTGACAATATTTCCTTCTTTAGAAGCAGCTAGGCCTAGGAGTAAAACTGGAATTCAGGCATTATGTTCATTGCATGTGGCCTTAGAGAAAGCCAAGAATGTTCTTCATCATTGCTCAGTGTGTAGTAAACTCTACCTGGCTGTAACTGGGGACTCCGTTCTCACTAAATTTGAGAAGGCTAAATGTGCTCTTGAAGATAGTCTTAGACGGGTGGAAGATATTGTTCCACAATCCATTGGATGTCAGGTTCAGGAGATTGTGAATGAATTTTCATGTGTGGAATTTTCACTTGATCCCTTAGAGAAGCAAGTTGGCGATGATTTAATTGCATTGCTCCAGCAGGGCAAAAAGTTTGATGACGATAGTGAAAGTTATGAGCTTGAATCTTTTCACCAGGCTGCTACTAGACTTGGGATCACATCTTCAAGAGTAGCTCTTGCTGAAAGAAGAGCTCTCAAGAAACTTATAGACAGGGCTCGAGCTGAAGAGGACAAACGAAAAGAATCAATTGTTGCATATCTTTTGCATCTTATGAGGAAATATTCCAAGTTATTCAGAAATGAGTTTGCAGACGACAATGATTCTCAGGGTTCTGGTCCTTGTTCTCCCACTGTTCAGGGATCTATCGAGGATGGTGTTCCTGTTGGTCATAGTCAGGCTTTTGAAAGACAGCTTTCAAAACTTAGTTCCTTTAATTTCAAACCAAATAATAATATGGAGCAGGGGCAAATGGCTCTACCACCGGAAGAGTTAAGGTGTCCAATATCTCTACAACTTATGTATGATCCTGTCATCATTGCTTCTGGGCAAACATATGAAAAGGTTTGTATAGAGAAATGGTTCAGTGATGGACACAGCAACTGCCCAAAGACCCAACAAAACCTTCCACATCTTTGCTTGACTCCTAATTACTGTGTTAAAGGTCTTGTTGCTAGTTGGTGTGAACAAAATGGAATTCCTATTCCTGAAGGCCCTCCTGAATCACTTGATCTTAACTACTGGAGATTGGTATTATCAGAGTCTGAGTCTACAAATTCAAGATCTGTAAATAGTGTAAGCTCTTGCAAGTTGAAGGGTGTCAAAGTGGTTCCTTTAGAAGAGAGTTGTATCTCAGAGAATTATGGGGAAAATAGAGCTGAAAGTGTATCTGCACAAGAGGAAGACACTGAGCAGTATCTTAGTTTTCTGAAAGTCTTGACTGAGGGGAACGATTGGAAGAGGAAATATGAAGTGGTAGAACAGTTAAGGCTGTTGCTGAGGGATGATGAGGAAGCTAGAATTTTGATGGGGGCTAATGGGTTTGTTGAAGCACTTGTTCAGTTTTTACAATCGGCTGTCCATGAAAGGAATTTGACGGCTCAAGAAAGCGGAGCAATGGCTCTCTTCAACCTAGCTGTGAATAATGACAGAAATAAGGAGATTTTGTTATCAGCTGGAGTTTTATCTTTGTTGGAGGAAATGATTTCTAACACCGGTTCTTATGGTTGTGCAACTGCTCTATATCTGAATCTCTCCTGCCTTGAAGAAGCCAAACCTATGATTGGCACGAGTCAGGCTGTACAGTTCCTAACCCAGATCCTTCAATCTGACTATGACATTCAATACAAGCAAGATTCTCTTCATGCTCTCTATAATCTTTCTACCGTGCCTTCCAATATTCCATACTTACTTTCATCTGGCATTGTTAATGGCCTACAATCCCTTCTTGTAGACCAGGGTGATGATTTTACATGGACAGAAAAATGCATAGCTGTTTTGATAAATTTAGCCACTTCTCAAGTTGGAAGGGAGGAAATGGTGTCAACTCCTGAACTCATTAGTGTGTTGGCTTCAATATTGGACACGGATGAGCTCGAAGTGCAGGAGCAAGCTGTCTCTTGTCTCCTAATTTTGTGCAACAGAAGTGAACAATGTTCTGACATGGTCCTGCAAGAAGGGGTTATACCTGCATTGGTATCAATATCAGTGAATGGGACCTCAAGAGGACAAGAAAAAGCTCAAAAACTCTTGATGCTATTCCGACAGCAGCGACGAGATGATTCACCTGTTGAGACACATCAGTCTCCTCCTGAAACTAGTGATTTCTCTGTACCACCTGCTGAAATGAAACCTCTGTGTAAGTCATTGACTAGAAGAAAGACCGGAAAAGGTTTTAGCTTTTTCTGGAGAAGCAAGAGCTATTCTGTGTACCAGTGTTGA 2298 0.4091 MDAAEVEENLFAVSDAKLHGQMCKALSIIYCKVLTIFPSLEAARPRSKTGIQALCSLHVALEKAKNVLHHCSVCSKLYLAVTGDSVLTKFEKAKCALEDSLRRVEDIVPQSIGCQVQEIVNEFSCVEFSLDPLEKQVGDDLIALLQQGKKFDDDSESYELESFHQAATRLGITSSRVALAERRALKKLIDRARAEEDKRKESIVAYLLHLMRKYSKLFRNEFADDNDSQGSGPCSPTVQGSIEDGVPVGHSQAFERQLSKLSSFNFKPNNNMEQGQMALPPEELRCPISLQLMYDPVIIASGQTYEKVCIEKWFSDGHSNCPKTQQNLPHLCLTPNYCVKGLVASWCEQNGIPIPEGPPESLDLNYWRLVLSESESTNSRSVNSVSSCKLKGVKVVPLEESCISENYGENRAESVSAQEEDTEQYLSFLKVLTEGNDWKRKYEVVEQLRLLLRDDEEARILMGANGFVEALVQFLQSAVHERNLTAQESGAMALFNLAVNNDRNKEILLSAGVLSLLEEMISNTGSYGCATALYLNLSCLEEAKPMIGTSQAVQFLTQILQSDYDIQYKQDSLHALYNLSTVPSNIPYLLSSGIVNGLQSLLVDQGDDFTWTEKCIAVLINLATSQVGREEMVSTPELISVLASILDTDELEVQEQAVSCLLILCNRSEQCSDMVLQEGVIPALVSISVNGTSRGQEKAQKLLMLFRQQRRDDSPVETHQSPPETSDFSVPPAEMKPLCKSLTRRKTGKGFSFFWRSKSYSVYQC 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04442 765 Gene3D - 405 716 IPR011989 -
Trre8g04442 765 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 466 512 IPR000225 GO:0005515
Trre8g04442 765 PANTHER U BOX DOMAIN-CONTAINING 21 710 - -
Trre8g04442 765 ProSiteProfiles U-box domain profile. 279 353 IPR003613 GO:0004842|GO:0016567
Trre8g04442 765 SMART arm_5 624 666 IPR000225 GO:0005515
Trre8g04442 765 SMART arm_5 540 581 IPR000225 GO:0005515
Trre8g04442 765 SMART arm_5 455 499 IPR000225 GO:0005515
Trre8g04442 765 FunFam RING-type E3 ubiquitin transferase 279 353 - -
Trre8g04442 765 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 278 353 IPR013083 -
Trre8g04442 765 SUPERFAMILY RING/U-box 277 355 - -
Trre8g04442 765 SMART Ubox_2 283 346 IPR003613 GO:0004842|GO:0016567
Trre8g04442 765 Pfam U-box domain 281 350 IPR003613 GO:0004842|GO:0016567
Trre8g04442 765 SUPERFAMILY ARM repeat 428 708 IPR016024 -
Trre8g04442 765 MobiDBLite consensus disorder prediction 712 733 - -
Trre8g04442 765 CDD RING-Ubox_PUB 281 333 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04442 Trre-Chr8 48697310 48701160 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04442 1 764 U-box Gene Family AT1G24330 65.212 0.0 1012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04442 - - gmx:100794099 1253.04