Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04441 ATGATGGATGCTGCTGAGGTTGAAGAAAATCTATTTGCTGTTAGTGATGCCAAGTTACATGGACAAATGTGCAAGGCTCTTTCTATAATATATTGCAAAGTATTGACAATATTTCCTTCTTTAGAAGCAGCTAGGCCTAGGAGTAAAACTGGAATTCAGGCATTATGTTCATTGCATGTGGCCTTAGAGAAAGCCAAGAATGTTCTTCATCATTGCTCAGTGTGTAGTAAACTCTACCTGGCTGTAACTGGGGACTCCGTTCTCACTAAATTTGAGAAGGCTAAATGTGCTCTTGAAGATAGTCTTAGACGGGTGGAAGATATTGTTCCACAATCCATTGGATGTCAGGTTCAGGAGATTGTGAATGAATTTTCATGTGTGGAATTTTCACTTGATCCCTTAGAGAAGCAAGTTGGCGATGATTTAATTGCATTGCTCCAGCAGGGCAAAAAGTTTGATGACGATAGTGAAAGTTATGAGCTTGAATCTTTTCACCAGGCTGCTACTAGACTTGGGATCACATCTTCAAGAGTAGCTCTTGCTGAAAGAAGAGCTCTCAAGAAACTTATAGACAGGGCTCGAGCTGAAGAGGACAAACGAAAAGAATCAATTGTTGCATATCTTTTGCATCTTATGAGGAAATATTCCAAGTTATTCAGAAATGAGTTTGCAGACGACAATGATTCTCAGGGTTCTGGTCCTTGTTCTCCCACTGTTCAGGGATCTATCGAGGATGGTGTTCCTGTTGGTCATAGTCAGGCTTTTGAAAGACAGCTTTCAAAACTTAGTTCCTTTAATTTCAAACCAAATAATAATATGGAGCAGGGGCAAATGGCTCTACCACCGGAAGAGTTAAGGTGTCCAATATCTCTACAACTTATGTATGATCCTGTCATCATTGCTTCTGGGCAAACATATGAAAAGGTTTGTATAGAGAAATGGTTCAGTGATGGACACAGCAACTGCCCAAAGACCCAACAAAACCTTCCACATCTTTGCTTGACTCCTAATTACTGTGTTAAAGGTCTTGTTGCTAGTTGGTGTGAACAAAATGGAATTCCTATTCCTGAAGGCCCTCCTGAATCACTTGATCTTAACTACTGGAGATTGGTATTATCAGAGTCTGAGTCTACAAATTCAAGATCTGTAAATAGTGTAAGCTCTTGCAAGTTGAAGGGTGTCAAAGTGGTTCCTTTAGAAGAGAGTTGTATCTCAGAGAATTATGGGGAAAATAGAGCTGAAAGTGTATCTGCACAAGAGGAAGACACTGAGCAGTATCTTAGTTTTCTGAAAGTCTTGACTGAGGGGAACGATTGGAAGAGGAAATATGAAGTGGTAGAACAGTTAAGGCTGTTGCTGAGGGATGATGAGGAAGCTAGAATTTTGATGGGGGCTAATGGGTTTGTTGAAGCACTTGTTCAGTTTTTACAATCGGCTGTCCATGAAAGGAATTTGACGGCTCAAGAAAGCGGAGCAATGGCTCTCTTCAACCTAGCTGTGAATAATGACAGAAATAAGGAGATTTTGTTATCAGCTGGAGTTTTATCTTTGTTGGAGGAAATGATTTCTAACACCGGTTCTTATGGTTGTGCAACTGCTCTATATCTGAATCTCTCCTGCCTTGAAGAAGCCAAACCTATGATTGGCACGAGTCAGGCTGTACAGTTCCTAACCCAGATCCTTCAATCTGACTATGACATTCAATACAAGCAAGATTCTCTTCATGCTCTCTATAATCTTTCTACCGTGCCTTCCAATATTCCATACTTACTTTCATCTGGCATTGTTAATGGCCTACAATCCCTTCTTGTAGACCAGGGTGATGATTTTACATGGACAGAAAAATGCATAGCTGTTTTGATAAATTTAGCCACTTCTCAAGTTGGAAGGGAGGAAATGGTGTCAACTCCTGAACTCATTAGTGTGTTGGCTTCAATATTGGACACGGATGAGCTCGAAGTGCAGGAGCAAGCTGTCTCTTGTCTCCTAATTTTGTGCAACAGAAGTGAACAATGTTCTGACATGGTCCTGCAAGAAGGGGTTATACCTGCATTGGTATCAATATCAGTGAATGGGACCTCAAGAGGACAAGAAAAAGCTCAAAAACTCTTGATGCTATTCCGACAGCAGCGACGAGATGATTCACCTGTTGAGACACATCAGTCTCCTCCTGAAACTAGTGATTTCTCTGTACCACCTGCTGAAATGAAACCTCTGTGTAAGTCATTGACTAGAAGAAAGACCGGAAAAGGTTTTAGCTTTTTCTGGAGAAGCAAGAGCTATTCTGTGTACCAGTGTTGA 2301 0.409 MMDAAEVEENLFAVSDAKLHGQMCKALSIIYCKVLTIFPSLEAARPRSKTGIQALCSLHVALEKAKNVLHHCSVCSKLYLAVTGDSVLTKFEKAKCALEDSLRRVEDIVPQSIGCQVQEIVNEFSCVEFSLDPLEKQVGDDLIALLQQGKKFDDDSESYELESFHQAATRLGITSSRVALAERRALKKLIDRARAEEDKRKESIVAYLLHLMRKYSKLFRNEFADDNDSQGSGPCSPTVQGSIEDGVPVGHSQAFERQLSKLSSFNFKPNNNMEQGQMALPPEELRCPISLQLMYDPVIIASGQTYEKVCIEKWFSDGHSNCPKTQQNLPHLCLTPNYCVKGLVASWCEQNGIPIPEGPPESLDLNYWRLVLSESESTNSRSVNSVSSCKLKGVKVVPLEESCISENYGENRAESVSAQEEDTEQYLSFLKVLTEGNDWKRKYEVVEQLRLLLRDDEEARILMGANGFVEALVQFLQSAVHERNLTAQESGAMALFNLAVNNDRNKEILLSAGVLSLLEEMISNTGSYGCATALYLNLSCLEEAKPMIGTSQAVQFLTQILQSDYDIQYKQDSLHALYNLSTVPSNIPYLLSSGIVNGLQSLLVDQGDDFTWTEKCIAVLINLATSQVGREEMVSTPELISVLASILDTDELEVQEQAVSCLLILCNRSEQCSDMVLQEGVIPALVSISVNGTSRGQEKAQKLLMLFRQQRRDDSPVETHQSPPETSDFSVPPAEMKPLCKSLTRRKTGKGFSFFWRSKSYSVYQC 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04441 766 SMART arm_5 541 582 IPR000225 GO:0005515
Trre8g04441 766 SMART arm_5 625 667 IPR000225 GO:0005515
Trre8g04441 766 SMART arm_5 456 500 IPR000225 GO:0005515
Trre8g04441 766 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 279 354 IPR013083 -
Trre8g04441 766 SUPERFAMILY RING/U-box 278 356 - -
Trre8g04441 766 Gene3D - 406 717 IPR011989 -
Trre8g04441 766 MobiDBLite consensus disorder prediction 713 734 - -
Trre8g04441 766 SUPERFAMILY ARM repeat 429 709 IPR016024 -
Trre8g04441 766 PANTHER U BOX DOMAIN-CONTAINING 22 711 - -
Trre8g04441 766 SMART Ubox_2 284 347 IPR003613 GO:0004842|GO:0016567
Trre8g04441 766 ProSiteProfiles U-box domain profile. 280 354 IPR003613 GO:0004842|GO:0016567
Trre8g04441 766 FunFam RING-type E3 ubiquitin transferase 280 354 - -
Trre8g04441 766 Pfam U-box domain 282 351 IPR003613 GO:0004842|GO:0016567
Trre8g04441 766 CDD RING-Ubox_PUB 282 334 IPR045210 -
Trre8g04441 766 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 467 513 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04441 Trre-Chr8 48697310 48701163 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04441 2 765 U-box Gene Family AT1G24330 65.212 0.0 1012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04441 - - gmx:100794099 1254.97