Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04431 ATGCAGTTTGATTCCGATTCAGATTCCGACGGATCTCACATCTCTTCAACTCCTCCAAGACAACCAAATCCACCACCACCACCACCATCACCAAAACCACCTCTTCCAGTTTCCAACAAAAAATCCAAAATCAAAACCAAACCCAAACCCTCAAAATCCAATAAACTCCCTTCAAACCCCTCCGAAACTCTCCCCCAACAAGACCCTGACTCTTTCCCTCCTCTTTCCCTCTCTTCCATTCCTTTCCATATCCGACAACGAACCTCCGAAGCTCCTTCAACTTCATCTTCCCATTCCATTGAAACCCTCCCCGCTGGGTTCTTCTCCAAATCAATTTCATTCTCCAAAAATCGTAAACCCTTACTCAATCTAGAAGCTTCTGAAAACGAACCGGTAGTTAATTCCCCTAAAGCCGTTGTAAAATCCGCGAAGAAGCATCCTAATTTAATAGGCGCTAGTACGCCAACGCCGATAGTAAAGGTACTACGAGGCGCCGGAGAAGGTAATTTTGTGAAATTGAATTTGAATGGTAAGAGAAAAAAGTTTTTGAACAAAGGTTGGAACAAAAAAGGAAAATTTGGCAGTGGAAAAAGGTATAGAAGTGGTTATAGTAGTTATAGAAGTAAACGTAAGAAATTGGAAGATGAAGGGGAAGATAATGAGGAAGATGGTTTGGATGAAGAGAATGCAAAGCAACAGGAAAAACGAAAGGGTTGGGAAAATGAATGCAAAGTGTTGGAGGAGGCTGTGTTAGCAGCAAGAAATGAAGCTTCTGATGAGAATTTGGTGAAGTTGTTGAAATTGATTCATGGTTATGATTCTTTTCGAGAGGGACAACTTGAGGCTATCAAGAATGTTCTTGCTGGGAAATCGACTATGCTTATTTTGCCGACCGGTGCAGGGAAGTCGTTGTGTTATCAGTTGAGTGCATTGATTTTGCCTGGGATTACGCTTGTTGTTAGTCCGTTGATAGCTTTGATGATTGATCAGCTTAGGCAATTGCCTCCGCTCATTTCGGGTGCTCTCCTAAGCAGTTCTCAGACGCTTGAAGAATCATCTGAAACGCTCAGCCAGGTTCGGCAAGGCACAGTTAAGGTGCTTTTTGTTTCACCAGAGCGGTTCTTGAATGAAGAGTTTCTATCTGTTATCTCTGCTGTGTCAGCCGTGTCACTCGTTGTTATTGACGAAGCACATTGTATATCTGAATGGTCTCACAATTTCCGACCTTCATTCATGAGACTTAGAGCGTCACTACTTCATAAAAGTCTTAATGTAGGTTCTGTTCTTGCAATGACAGCAACTGCTACAACCACAACTTTAGACGCCGTCATGTCGGCCCTAGATATTCCTTACACAAATCTTATTCAGAATGCACACTTAAGGGACAATTTGCGTTTGTCAGTGTCTTTGATAAAAAATAGAATGAAAGACCTACTGGCTCTGATAAAGTCTTCTCCTTTCACGGAAGTTAAAAGCATCATAGTATACTGCAAATTTCAGTCTGAAACTGATCAAATCAGCAGATACTTGAATGATAACAATATCAAGGCAAAGAGTTATCATAGTGGTATATCTGCAAAGGAACGTGGCTACGTACAAGAGTTGTTTGGTTCAAACAAGATCAGAGTGGTTGTTGCAACTGTGGCATTTGGCATGGGACTGGATAAAAGAGATGTTGGAGCAGTAATTCATTACAGTTTACCCGAAAGTCTGGAAGAGTATGTACAGGAGATAGGACGTGCCGGAAGGGATGGGAGGTTGTCCTCTTGTCACCTATTTTATGATGATGAGATGTATTTCAAACTTCGTAGTCTAATGTACAGTGAAGGAGTAGATGAATATGCCATGAATAAATTTATGTCTGAAGTATTTCCTGCTGACAAAAGCTCCTGTGGGAAAATCTGTTCGTTAATCAAAGAATCTGCTGCACGCAGATTTGATATGAAAGAAGAGGTAATTCTCACAGTTTTGACACGCTTGGAGCTAGGTGATGTGCAATACTTACATTTACTTCCACAAACAAATGCTACCTGTGTTCTGAATTTTCATATGACTCCAGCTGTGTCCCTTGCCCAAAAGGTTTCTGCTATTGCTGTGATTCTAAAAAGATCTGAAAATAAGCACGGACAATATATTTTTGATATTCCAACTGTGGCAAACGACATGGGGGTCACACCAGTTGAATTAACAAATCAGTTGTACGACCTAAAGTTGAAGGGAGAAATAACTTATGAAATGAAGGACATGGCCTACTGTTATAGGATTCTTGAAGTCCCAACAGACTTTTTTTCTCTATCAGCTGATATTACCAAATGGTTATCTGAAGTTGAAAGTTGTAAGGTACGGAAAATGGATGTAATGTTTAATGCCGCATATTTCGCAGTAAATCTATGTGATAAGATGAACGGTTGCAGTAGTGCCGATCACACTTCATGCTTGCAAAGGATAATATTGGATTACTTTGCTGGAGTTGATAATATTGATTTCTGCAAGAAAATCAGTCAAAGCAGTCCTTTCCTGCGGGCAGATATAAAGGTCTTTCTACAGAGCAATTCACATGCTCGTTTTACACCAAGAGCTGTTGCTAGAGTAATGCACGGAATTGCAAGCCCAGCCTACCCTTATACAATATGGGGTAAAACCCATTTCTGGGGAAGGTATACCAAGATAGACTTTAAGGTGGTGATGGAAGCAGCAAAGGAAGAACTCAAAAACTTTATTGGAAAAGATATGCTCTAG 2739 0.4067 MQFDSDSDSDGSHISSTPPRQPNPPPPPPSPKPPLPVSNKKSKIKTKPKPSKSNKLPSNPSETLPQQDPDSFPPLSLSSIPFHIRQRTSEAPSTSSSHSIETLPAGFFSKSISFSKNRKPLLNLEASENEPVVNSPKAVVKSAKKHPNLIGASTPTPIVKVLRGAGEGNFVKLNLNGKRKKFLNKGWNKKGKFGSGKRYRSGYSSYRSKRKKLEDEGEDNEEDGLDEENAKQQEKRKGWENECKVLEEAVLAARNEASDENLVKLLKLIHGYDSFREGQLEAIKNVLAGKSTMLILPTGAGKSLCYQLSALILPGITLVVSPLIALMIDQLRQLPPLISGALLSSSQTLEESSETLSQVRQGTVKVLFVSPERFLNEEFLSVISAVSAVSLVVIDEAHCISEWSHNFRPSFMRLRASLLHKSLNVGSVLAMTATATTTTLDAVMSALDIPYTNLIQNAHLRDNLRLSVSLIKNRMKDLLALIKSSPFTEVKSIIVYCKFQSETDQISRYLNDNNIKAKSYHSGISAKERGYVQELFGSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSSCHLFYDDEMYFKLRSLMYSEGVDEYAMNKFMSEVFPADKSSCGKICSLIKESAARRFDMKEEVILTVLTRLELGDVQYLHLLPQTNATCVLNFHMTPAVSLAQKVSAIAVILKRSENKHGQYIFDIPTVANDMGVTPVELTNQLYDLKLKGEITYEMKDMAYCYRILEVPTDFFSLSADITKWLSEVESCKVRKMDVMFNAAYFAVNLCDKMNGCSSADHTSCLQRIILDYFAGVDNIDFCKKISQSSPFLRADIKVFLQSNSHARFTPRAVARVMHGIASPAYPYTIWGKTHFWGRYTKIDFKVVMEAAKEELKNFIGKDML 912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04431 912 MobiDBLite consensus disorder prediction 1 101 - -
Trre8g04431 912 FunFam ATP-dependent DNA helicase Q4 243 453 - -
Trre8g04431 912 FunFam ATP-dependent DNA helicase Q-like 5 461 652 - -
Trre8g04431 912 MobiDBLite consensus disorder prediction 1 17 - -
Trre8g04431 912 CDD SF2_C_RecQ 461 594 - -
Trre8g04431 912 NCBIfam RecQ family ATP-dependent DNA helicase 265 623 IPR004589 GO:0004386|GO:0006310
Trre8g04431 912 Gene3D - 245 452 IPR027417 -
Trre8g04431 912 Pfam DEAD/DEAH box helicase 278 439 IPR011545 GO:0003676|GO:0005524
Trre8g04431 912 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 315 597 IPR027417 -
Trre8g04431 912 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 283 453 IPR014001 -
Trre8g04431 912 MobiDBLite consensus disorder prediction 198 237 - -
Trre8g04431 912 SMART ultradead3 271 469 IPR014001 -
Trre8g04431 912 MobiDBLite consensus disorder prediction 81 101 - -
Trre8g04431 912 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 390 399 IPR002464 -
Trre8g04431 912 Gene3D - 461 643 IPR027417 -
Trre8g04431 912 MobiDBLite consensus disorder prediction 18 36 - -
Trre8g04431 912 CDD DEXHc_RecQ4-like 263 460 - -
Trre8g04431 912 PANTHER DNA HELICASE RECQ FAMILY MEMBER 251 779 - -
Trre8g04431 912 SMART helicmild6 504 585 IPR001650 -
Trre8g04431 912 MobiDBLite consensus disorder prediction 51 74 - -
Trre8g04431 912 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 474 631 IPR001650 -
Trre8g04431 912 Pfam Helicase conserved C-terminal domain 487 584 IPR001650 -
Trre8g04431 912 Coils Coil 203 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04431 Trre-Chr8 48614295 48621437 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04431 490 617 Eukaryotic Initiation Factors Gene Family AT3G19760 30.769 2.06e-13 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04431 K10730 - gmx:100811214 1190.25