Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04425 ATGATGAACTTTTGGATTTTGTTGTTAGAGGAAGAGAACATTGTTGATGTAGTTTCTTTACCTATGTTGTTAGTACTATGTTTCAATGCACTTCCTAATGTTTGTGTAAAGGAACAAAGTGAAATAGAACAAAGGTTACTCCAAAAAGAGTTTGAATCTTCCACTTTGGGAGATGAAAGTGAAGAGGCTTTTGTAAAAGCTAGTTTATGGAGTAAACTTACATTTAGATGGTTGAATCCTATTTTCGAAATGGGTCGGATTCAGAAACTTGAACATGTTCATGTTCCTTCTGTTCCTCAATCTGAGACTGCTGCTAGTGCTTCTTCTATGTTGGAAGAATCTATTAGGAAACAGAAACTTCAAGGTGGTTCATTGACAAAAGCTATTGTTCATTCTGTTTGGAAATCATTAGCCTTAAATGCTGTTTTAGCAGGTGTTAATACTATTGCATCTTATATTGGTCCGTTGTTGATATCGAATTTTGTGAATTTTTTATTGTCGAATGATGATAATTCAAATATCAAATATGGAATGATTCTTGCCTTTATTTTCTTCCTGTCAAAAACTGTTGAGTCATTGAGTCAAAGACAATGGTACTTTGGTGCTCAGAGAATCGGTATTCAGGTGCGTGCAGCTCTTATGGCACTGGTTTATAGTAAGTCGCTAACGATTAAGTGTGGTGGACCAACACATGGTAAAATCATCAATTTGATTAATGTGGATGTTGAAAGAATTGGTGATTTTTGTTGGTATGTTCATGGAGTTTGGTTGCTTCCAGTTCAGATTATTTTGGCTTTGGCGATCTTATACATAAATTTGGGTTACACACCTTCTATTGCCGCACTTGTTGTTACGATTTTGGTTATGGTGTGTAACACACCTTTGGCTAATATGCAAGAAGGTTTGCATTCCAAGATAATGGAAGCTAAAGATTCAAGAATCAAAATGACTTCTGAGACTATGAAGAACATTCGAATTTTAAAGTTGCATTCATGGGAATCTACATTTCTGCAGAAACTTTTCCAACTTAGGGACACAGAGAGGAAGTGGTTGCATAAGTACCTCTACTTATGCTCAGCAGTAGCCACTTTATTTTGGGCATCGCCGACTTTAGTTTCTGTTTTCACTTTCGGTGCTTGTATATTGGTGAAAACCGAACTAACTGCAGCTACGGTTCTCTCGGCTCTTGCGACATTTCGTATTTTGCAAGAACCAATTTACAATTTACCTGAGCTTATTTCCATGATAACTCAAACAAAAGTCTCGGTTGATCGAATTCAGGATTTCATAAAGGAAGAAGATCAAAACCAATTCATCAATAAGCATGCTTCCAAAACTTCAATAATTGCTATTGAAATAAAGCCGGGAGAATATGCATGGGAAGAAAATGATCAATACCTCAAGAAACCAACGATTCATATTGCGGAGAAATTATCGATAAATAAGGGTCAGAAGGTAGCAGTTTGTGGGCCAGTAGGGTCTGGAAAATCAAGCTTGCTTTGCAGTATGCTCAGTGAGATTTCATTGGTTTCCGGGGCAGCAACAAAAGTTTATGGGACTAGAAGTTATGTACCACAAAGTCCATGGATTCAATCTGGAACTATAAGAGATAATATATTGTTTGGCAAGCAAATGAATAAGGACTTTTACGAAAAAGTTGTGGATGGTTGTGCATTGCTCCAAGATATCAACTTATGGAGTGATGGAGATTTAACCATGGTGGAGGAGAGAGGAATAAATTTAAGTGGAGGACAAAAACAACGAATTCAATTGGCAAGGGCTGTTTACAATGACTCAGATATTTATTTTCTCGATGATCCTTTTAGTGCCGTTGATGCTCATACAGGAAGCCATTTGTTTAAGGAATGTCTTATGAAACTTTTATACGATAAAACTGTTGTCTATGCGACACATCAACTGGAATTCTTGGAAGCTGCAGATCTTATTTTGGTTATGAAAGATGGAAAAATAGTGGAATCTGGAAGGTATAAAGATCTCATAGCATGTCCTAATAGTGAATTTGTCCAGCAAATGTCTGCTCATGAAGAAACAATATGTCAAATTCCATGCCGGAAAGATGATTCTGTTTGCTGCAGACCTTGCCAAAAAAATCCAATTGAAATCGCAGAAGAAAATATTCAAGAGATCATGATGGATTGGAAGAGAACCAGAGAAGAGGAAGCAATGACCGGTCGAGTAAAATGGAGTGTTTACTCAACCTTTGTCACATTAGCTTATAAAGGAGCACTTGTTCCAGTTATTCTTCTCTGTCAAGTTCTCTTTCAAGTTATGCAGATGGGAAGCAATTATTGGATGTCTTGGGCTACAGAAAAAAAGGGAAGGGTCGATAATGTGCGGCTTATGGGAATTTTTGCTCTTTTGTCTGGTGGCAGCTCAGTCTTCATACTTGGAAGGACTGTTTTAATGGCAACAGTTGCCGTGGAGACTGCTCAACGCCTTTTTCATGGAATGATCACGTCAGTTTTCAGGGCACCTGTTTCATTTTTTGATACCACACCTTCTAGCCGAATTCTGAGTAGGTCATCTACGGATCAAAGTACGGTAGATACAGACATACCATACCGATTAGCTGGACTAGTTTTTGCACTTATCCAGTTATTGAGTATCATTGTACTAATGTCTCAAGCTGCATGGCAAGTCATTCTTCTCTTTTTTGTGGTTCTTGCTATCTCCGTTTGGTATCAGGCATATTACATCACAACAGCTAGGGAATTGGCCAGGATGGTGGGGATTCGAAAGGCGCCGATCTTGCATCACTTCTCAGAATCCATTGCTGGGGCTGCCACAATCCGCTGTTTCAATCAAGAGAAAATATTCTTGACCAAGGTTATGGTACTAATTGACGATTATTCTCGTGTAGCCTTTCACAACTTTGCCACCATGGAATGGTTGTCTGTCAGAATCAATTTTCTCTTCAATTTGGTCTTCTATTTTGTTCTCATCATCTTGGTTAGTTTGCCAAGGTCTGCCATCGATCCCAGCTTGGCGGGTCTTGTAGCAACTTATGGTTTGAACTTAAATGTGCTTCAAGCTTGGGTGATATGGAATTTATGCAACGTTGAGAACAAAATGATATCAGTAGAGAGAATATTACAATTCTCTAATATACCAAGCGAAGCGCCATTAATTATTGAAGATTGTAGGCCTGAACCAGAGTGGCCTAAGGAAGGAATAATTGAATTCCTTAACCTTCATATACAATATGATCCTACCGGTCCTATGGTTCTCAAAGGCGTCACTTGCATCTTCCCTGGACAGAAGAAAATTGGAGTAGTAGGTAGGACCGGGAGTGGAAAATCTACTCTGGTGCAAGCCCTCTTTCGAGTGGTGGAGCCTTTGGAAGGATGTATACTTATTGATGGCGTAAATATTTCTAAGATCGGTCTGCAAGATTTAAGATCTAAGCTTGGTATCATTCCTCAGGATCCAACCTTGTTTTTAGGTACCGTAAGGACTAACTTGGATCCCTTGGAACAACATACCGATCAAGAACTTTGGGAGGTTCTCAGCAAGTGCCATCTCGCCGAAATAGTACAGCAAGATCCAAGGCTTCTTGATGCACCAGTGGCCGAGAATGGAGAAAATTGGAGTGTTGGACAGAGACAACTAGTTTGCCTTGCTAGGCTACTACTTAAGAAAAGAAAAATTTTGGTCCTTGACGAGGCAACTGCATCCATCGACACTGCAACTGATAATTTAATTCAAAAGACTATCAGAGAAGAAACAAGTGGATGCACAGTCATTACAGTAGCACATAGAATTCCTACTGTCATTGACAATGATTTGGTTTTGGTCCTCAACGAAGGGACAATTGCGGAGTATGATAAACCATCTCAATTGCTACAAGACAGTTCTTCTTCGTTCTCAAAGTTGGTGTCGGAATTTTTGAGGAGATCATCCCAAAGTAATTGCTAA 3936 0.3895 MMNFWILLLEEENIVDVVSLPMLLVLCFNALPNVCVKEQSEIEQRLLQKEFESSTLGDESEEAFVKASLWSKLTFRWLNPIFEMGRIQKLEHVHVPSVPQSETAASASSMLEESIRKQKLQGGSLTKAIVHSVWKSLALNAVLAGVNTIASYIGPLLISNFVNFLLSNDDNSNIKYGMILAFIFFLSKTVESLSQRQWYFGAQRIGIQVRAALMALVYSKSLTIKCGGPTHGKIINLINVDVERIGDFCWYVHGVWLLPVQIILALAILYINLGYTPSIAALVVTILVMVCNTPLANMQEGLHSKIMEAKDSRIKMTSETMKNIRILKLHSWESTFLQKLFQLRDTERKWLHKYLYLCSAVATLFWASPTLVSVFTFGACILVKTELTAATVLSALATFRILQEPIYNLPELISMITQTKVSVDRIQDFIKEEDQNQFINKHASKTSIIAIEIKPGEYAWEENDQYLKKPTIHIAEKLSINKGQKVAVCGPVGSGKSSLLCSMLSEISLVSGAATKVYGTRSYVPQSPWIQSGTIRDNILFGKQMNKDFYEKVVDGCALLQDINLWSDGDLTMVEERGINLSGGQKQRIQLARAVYNDSDIYFLDDPFSAVDAHTGSHLFKECLMKLLYDKTVVYATHQLEFLEAADLILVMKDGKIVESGRYKDLIACPNSEFVQQMSAHEETICQIPCRKDDSVCCRPCQKNPIEIAEENIQEIMMDWKRTREEEAMTGRVKWSVYSTFVTLAYKGALVPVILLCQVLFQVMQMGSNYWMSWATEKKGRVDNVRLMGIFALLSGGSSVFILGRTVLMATVAVETAQRLFHGMITSVFRAPVSFFDTTPSSRILSRSSTDQSTVDTDIPYRLAGLVFALIQLLSIIVLMSQAAWQVILLFFVVLAISVWYQAYYITTARELARMVGIRKAPILHHFSESIAGAATIRCFNQEKIFLTKVMVLIDDYSRVAFHNFATMEWLSVRINFLFNLVFYFVLIILVSLPRSAIDPSLAGLVATYGLNLNVLQAWVIWNLCNVENKMISVERILQFSNIPSEAPLIIEDCRPEPEWPKEGIIEFLNLHIQYDPTGPMVLKGVTCIFPGQKKIGVVGRTGSGKSTLVQALFRVVEPLEGCILIDGVNISKIGLQDLRSKLGIIPQDPTLFLGTVRTNLDPLEQHTDQELWEVLSKCHLAEIVQQDPRLLDAPVAENGENWSVGQRQLVCLARLLLKKRKILVLDEATASIDTATDNLIQKTIREETSGCTVITVAHRIPTVIDNDLVLVLNEGTIAEYDKPSQLLQDSSSSFSKLVSEFLRRSSQSNC 1311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04425 1311 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 753 1029 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre8g04425 1311 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1066 1300 IPR003439 GO:0005524
Trre8g04425 1311 Gene3D - 473 694 IPR027417 -
Trre8g04425 1311 ProSitePatterns ABC transporters family signature. 581 595 IPR017871 GO:0005524|GO:0016887
Trre8g04425 1311 Gene3D - 1049 1302 IPR027417 -
Trre8g04425 1311 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 477 669 IPR027417 -
Trre8g04425 1311 FunFam ABC transporter C family member 10 121 434 - -
Trre8g04425 1311 SMART AAA_5 482 656 IPR003593 GO:0016887
Trre8g04425 1311 SMART AAA_5 1092 1285 IPR003593 GO:0016887
Trre8g04425 1311 CDD ABC_6TM_ABCC_D2 751 1041 IPR044726 GO:0140359
Trre8g04425 1311 CDD ABC_6TM_ABCC_D1 139 426 IPR044746 GO:0140359
Trre8g04425 1311 CDD ABCC_MRP_domain2 1064 1284 - -
Trre8g04425 1311 Pfam ABC transporter transmembrane region 754 993 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre8g04425 1311 Pfam ABC transporter transmembrane region 139 405 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre8g04425 1311 SUPERFAMILY ABC transporter transmembrane region 752 1046 IPR036640 GO:0005524|GO:0016020
Trre8g04425 1311 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 453 679 IPR003439 GO:0005524
Trre8g04425 1311 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1058 1292 IPR027417 -
Trre8g04425 1311 Pfam ABC transporter 1083 1231 IPR003439 GO:0005524
Trre8g04425 1311 FunFam ABC transporter C family member 3 1049 1301 - -
Trre8g04425 1311 Coils Coil 706 726 - -
Trre8g04425 1311 CDD ABCC_MRP_domain1 451 656 - -
Trre8g04425 1311 FunFam Multidrug resistance-associated protein 4 436 695 - -
Trre8g04425 1311 FunFam ABC transporter C family member 5 715 1047 - -
Trre8g04425 1311 Pfam ABC transporter 478 608 IPR003439 GO:0005524
Trre8g04425 1311 SUPERFAMILY ABC transporter transmembrane region 131 433 IPR036640 GO:0005524|GO:0016020
Trre8g04425 1311 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 66 1300 - -
Trre8g04425 1311 Gene3D ABC transporter type 1, transmembrane domain 717 1047 IPR036640 GO:0005524|GO:0016020
Trre8g04425 1311 Gene3D ABC transporter type 1, transmembrane domain 124 436 IPR036640 GO:0005524|GO:0016020
Trre8g04425 1311 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 138 418 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04425 Trre-Chr8 48543185 48548118 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04425 466 706 Calmodulin-binding Proteins AT2G36910 28.302 1.78e-19 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04425 - - mtr:25501707 2393.62