Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04409 ATGGTACACAACAGGTCTATTCTCTCTCACAATATAGACAACGGTTGCTTTCCTTCTCCACATCTTGATGCTTTTCCAGCTGGTTTACGAGTTCTCGTTGTCGATGATGATCCAACATGGCTTAGAATCCTTGAAAAAATGCTCAAAAAATGCTTTTACCAAGTTACCACATGTTGTTTAGCAATAGAGGCTCTTAAGAAGCTTCGCGAAAGGAAAGATGCATATGACATAGTGATCAGTGATGTAAACATGCCTGATATGGATGGTTTCAAGCTTCTTGAACATGTTGGACTTGAGATGGATCTTCCTGTCATTATGATGTCTGTTGATGGAGAAACAAGTAGAGTCATGAAAGGTGTTCAACATGGAGCATGTGATTATTTGCTTAAACCTATAAGGATGAAAGAATTGCGAAACATATGGCAACATGTCTTAAGAAAAAGAATACACGAGGCAAGAGAATTCGAAACTCTTGAGGGAATTCACTTAATGACAAATGGATCAAATCACACTGATGACAGTAACTTGTTTGCTGTAGGAGGAGAAATGAACTTAATGAAGAAAAGAAAAGATTTCGATAATAAATATGATGACAAAGAATTTGGAGATCAAACTTCCTTAAAGAAAGCTAGAGTAATTTGGTCTGTTGATCTTCATCAGAAGTTTGTTAAAGCAGTGAATCGAATAGGATTCGATAAAGTTGGTCCCAAGAAAATTCTAGATTTGATGAATGTTCCATGGCTGACTAGAGAAAATGTTGCTAGTCACTTGCAGAAGTATCGACTCTACTTGAGTAGGTTGCAAAAGGAAAATGATCAGAAATCTTCCACAGGTGGAATAAAGCATTCAGATTTACCTTCAAAAGATTCAGAATGTCTAAGTTTTCTCAACTCTCTTAACAAGCAACAAAACGATGGCGCAGTCGACAACTTCAGATATTTAGATGGGACATTGAAACAACTTCATATGGATACTACAAGTCACGAAGTTGATCTCGATGGAATTGTGACAAGGCCAACAATAGAAAAAATAAGAGCTTCAACTTGTGATATTACTGATCCGATGATAAGAAAGAGTTCACGGATAGGCCGTAATCAACCATTTGAATCTGCAGAATCAGAAGAAAATCATACAGTTTTTGAGTACTCCACCGTTTCGACACAATGCTCTTGGAATGAAGTTCCAAAAAGGCTACTCAAAGAAGAACAAAATACACAGAAGCACTTCCAAATTGATCAATCGCAATCAATGAATTCCAATCCCTCCTATTACAAGAGTGATTACATTAGTCCTGTGAATTCAACGGTGTCGGAAGTTGACATCTTTCCTAGTCAATCCAAAAGCCTCATCGCGAATGATCAATCTCCAGATATCATTCTCACTTCAAATTTGAGTTCTAAAGCACCAGGATATAATCTCGGCTGCATTCCTGATATGGAAATTTACCAAAGAAACCTACTTTTGGACAGCCATGGAGCTTCAACACCTTTGGATGAAGACTTACATTTATGTTTGATACAAGGTGAATACTATAATATGAACTTTGGCTTGCAAAATATAGAGATGTCAGAGTATTATGATCCATGGCTTATTGCTGAAGTACCTACCAATTTGCATGATTCATCAGATTATTCGTAG 1638 0.37 MVHNRSILSHNIDNGCFPSPHLDAFPAGLRVLVVDDDPTWLRILEKMLKKCFYQVTTCCLAIEALKKLRERKDAYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVLRKRIHEAREFETLEGIHLMTNGSNHTDDSNLFAVGGEMNLMKKRKDFDNKYDDKEFGDQTSLKKARVIWSVDLHQKFVKAVNRIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLSRLQKENDQKSSTGGIKHSDLPSKDSECLSFLNSLNKQQNDGAVDNFRYLDGTLKQLHMDTTSHEVDLDGIVTRPTIEKIRASTCDITDPMIRKSSRIGRNQPFESAESEENHTVFEYSTVSTQCSWNEVPKRLLKEEQNTQKHFQIDQSQSMNSNPSYYKSDYISPVNSTVSEVDIFPSQSKSLIANDQSPDIILTSNLSSKAPGYNLGCIPDMEIYQRNLLLDSHGASTPLDEDLHLCLIQGEYYNMNFGLQNIEMSEYYDPWLIAEVPTNLHDSSDYS 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04409 545 Gene3D - 29 188 - -
Trre8g04409 545 ProSiteProfiles Response regulatory domain profile. 30 145 IPR001789 GO:0000160
Trre8g04409 545 SUPERFAMILY Homeodomain-like 207 266 IPR009057 -
Trre8g04409 545 NCBIfam myb-like DNA-binding domain, SHAQKYF class 209 262 IPR006447 GO:0003677
Trre8g04409 545 Pfam Response regulator receiver domain 31 140 IPR001789 GO:0000160
Trre8g04409 545 Pfam Myb-like DNA-binding domain 214 261 IPR001005 -
Trre8g04409 545 PIRSF RR_ARR_type-B 8 497 IPR017053 GO:0003677|GO:0003700|GO:0009736
Trre8g04409 545 SMART REC_2 29 141 IPR001789 GO:0000160
Trre8g04409 545 CDD REC_typeB_ARR-like 31 145 - -
Trre8g04409 545 SUPERFAMILY CheY-like 28 160 IPR011006 -
Trre8g04409 545 Gene3D - 205 268 - -
Trre8g04409 545 FunFam Two-component response regulator 205 268 - -
Trre8g04409 545 PANTHER TWO-COMPONENT RESPONSE REGULATOR 29 362 IPR045279 GO:0009736
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04409 Trre-Chr8 48472789 48475161 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04409 22 275 Response Regulator Gene Family AT2G25180 54.753 6.77e-82 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Trre8g04409 Response_reg 1.6e-23 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04409 K14491 - gmx:100778324 763.451