Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04406 ATGGGCCGTCGCAAAATTGAGATTGAGATTGTGAAAGACCCCAACACGAGGCAGGTTACATTCTCAAAGCGTCGAACAGGCTTATTCAAGAAAGCAAATGAATTGTCTATTTTGTGTGGAGCAGAAGTCGCTATTGTTGTGTTTTCTCCAGGGAACAAGCCTTACTCTTTTGGTCATCCAGGAGTTGATATTGTTGCGGCCAAGTATCTTCAACAAGATCTTGAACTAGGTGACTCCCAAGGAGACCCCTCTTCTGATACTTCCAGTATGGAGGATCTTGAACTAAGTGACTCCCAAGGAGACCCCTCTTCTGATACTTCCAATATGGAAAAGTTGAATCTGGAACTTGCTGAGGTGTTGGCTGAAATTCGTGAAGGTGAAAAGGAGACTGAGACTTATGATGAGATCTTGAAGCAAAATGATGTGACAACACTCTCTGAACTTGAAGAATTGAGAGATTCATACAAAAGGCTTCAAGATTGGGTAAAATTGTGTCTTAGTGATATCGAGATATCAGAATATATGATGTTGCTTGCTAAGGAGCCAGTGGTAGGGGTTAAAGCAAAATCTGCAAAAAAGAATAGAAGAAATTGA 594 0.4108 MGRRKIEIEIVKDPNTRQVTFSKRRTGLFKKANELSILCGAEVAIVVFSPGNKPYSFGHPGVDIVAAKYLQQDLELGDSQGDPSSDTSSMEDLELSDSQGDPSSDTSNMEKLNLELAEVLAEIREGEKETETYDEILKQNDVTTLSELEELRDSYKRLQDWVKLCLSDIEISEYMMLLAKEPVVGVKAKSAKKNRRN 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04406 197 Coils Coil 109 129 - -
Trre8g04406 197 MobiDBLite consensus disorder prediction 77 108 - -
Trre8g04406 197 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Trre8g04406 197 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Trre8g04406 197 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Trre8g04406 197 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Trre8g04406 197 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Trre8g04406 197 PANTHER MADS BOX PROTEIN 3 160 - -
Trre8g04406 197 MobiDBLite consensus disorder prediction 76 108 - -
Trre8g04406 197 SUPERFAMILY SRF-like 1 71 IPR036879 GO:0003677|GO:0046983
Trre8g04406 197 FunFam Agamous-like MADS-box protein AGL62 13 77 - -
Trre8g04406 197 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 57 IPR002100 GO:0003677|GO:0046983
Trre8g04406 197 Gene3D - 14 80 IPR036879 GO:0003677|GO:0046983
Trre8g04406 197 CDD MADS_MEF2_like 2 71 IPR033896 GO:0000977|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04406 Trre-Chr8 48437100 48437693 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04406 1 180 Type I MADS-box Gene Family AT2G34440 42.162 2.28e-36 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trre8g04406 SRF-TF 1.9e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04406 - - mtr:11439559 277.715