Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04401 ATGAAACTTTCTTCAGCTGGGTTTAGTCCTCCACCTGAGGAAGGAGAAAAACGGGTTTTAGATTCGGAACTTTGGCATGCTTGTGCTGGTCCTCTTGTTTCTTTGCCGGCTGATGGAAGCCGCGTCGTTTACTTTCCACAAGGTCACAGTGAACAGGTTGCTGTATCTACCAACAGGGAAGTTGATACTTATATTCCGAATCCAAGTTTACCTCCCCAACTTATTTGTCAACTTCATAATTTGACTATGCATGCAGATACGGAGACAGATGAAGTGTATGCACAGATGACCTTGCAGCCTCTAAATCCTGAAGAGCAAAAAGAGGCTTATCATCCTGCAGAGTTGGGAACTGCAAACAAACAGCCAACAAACTATTTCTGCAAAATTTTGACAGCCAGTGATACAAGTACTCATGGTGGATTCTCTGTTCCTCGCCGGGCAGCTGAAAAAGTTTTTCCTCCACTGGACTTTTCACAACAACCTCCTGCTCAAGAGTTGATTGCAAGGGATTTGCATGGTAATGACTGGAAATTCAAACATATCTTCCGAGGCCAGCCCAAAAGGCATTTACTTACAACAGGATGGAGTGTCTTTGTGAGTGCTAAAAGACTTGTTGCTGGTGATTCAGTGCTGTTTATATGGAATGACAAAAATCAATTGCTTCTTGGAATTCGGCGTGCTAATCGACCCCAACATATGATGCCTTCATCAGTGTTGTCAAGTGATAGCATGCACTTAGGGTTGCTGGCTGCTGCAGCTCATGCAGCTGCAACGAACAGTCGTTTCACCATTTTCTATAACCCACGTGCTAGCCCATCTGAATTTGTCATACCCCTAGCAAAGTATGTTAAAGCTGTATATCATACTCGAGTTTCAGTTGGTATGCGCTTCAGGATGCTTTTTGAAACAGAGGAATCTAGTGTTCGGCGATACATGGGAACAATAACGGGCATCAGTGACCTGGATTCTGTCCGGTGGCCAAATTCACATTGGCGTTCAGTAAAGGTTGGCTGGGACGAATCCACTGCAGGTGAGAGGCAACCTAGAGTGTCTCTATGGGAAATTGAGCCACTAACAACATTTCCGATGTATCCATCTCCATTCCCCCTTAGGCTTAAAAGACCATGGCCTCCAGGATTGCCTGCATTCCATGCAGGCTTGAAGGAGGATGATTATGGCATGAATTCTCCATTATTGTGGCTTCGAGATGCAGATAGAGGGCTTCAGACTCTTAATTTTCAAGGGATGGGTGTTAATCCTTGGATGCAGGCGAGGCTAGATCCGTCCATGATGAATATGCAACCAGACATGTACCAAGCTATGGCAGCTGCTGCACTTCAGGATATGAGGACTTTAGATCCTTCTAAACAGCATCCTGCCTCCTTACTTCAATTTCAGCAGCCACAGAATTTCACCAATGGTACTGCTGCTTTAATGCAAAACCAGATGTTGCAGCAATCTCAACCTCAGCAGAATTTTTCAAAGAATCAAGAAAGTCAACTTCCATCTCAATCTCAGGCTCAAACACAAAATTTTCAGCAGCTTCTTCAGAATCAGCACTCATTCACTAATCAAAATTATCAACATCTGCAGCAACAGCAACAACTACAACAGCAGCAACAACAACAACAACAACAACATCATCAACAGCAACAGCAACAGCAACAACAGCAACAACAACAACAACAGCAACAGCAACAACAACAACAACAACAGCAACAACAGCAACAACAGCAGCAGCAGCAAGTTGTAGATCGTCAGCAAATTTCAAATGCTGTCTCTACAATGTCTCAGTTTGTTTCGGCACCACAATCTCAATCAACGCAGCCAATGCAAGCTATCTCTTCAATCGGCAATCAGCAACATTTTTCTGATTCAAATGGGAACCCTGCTACTACTGCTGTTGTTTCTCCTTTGCACAATATGTTAGGTTCATTCCCCAATGACGAAACATCTCACCTTCTCAACCTTCCTAGACAAAACTCTTGGGTTCCTGTTCAATCTTCAACTGCATGGCCTTCGAAGCGCATTGCAGTTGATCCTCTCCTTTCTTCCGGAGCATCTCATTATGTTCTGCCTCAAGTTGAGCAGCTAGGGCAGTTACAGACTACCATGTCTCAAAATGCTATTACCTTGCCCCCATTTCCTGGTAGGGAGTGTACAATAGAAGCAAACACCGATCCACAAAACCATCTGTTGTTTGGTTTTAACATAGAGCCCTCATCACATCTAGTTTATAATGAGATGTCAAACCTTAAGAGGGTCAATAGCAACTGTGACTCATCAGCTGTACCTTTTCAATCTTCTACGTACCTGAATACAACAGGTGCCGATTCTTCATTGAATCCTGGAATGACACACAGCATTGGTGAGTCGGGCTTCCTGCAAACTCCAGAAAATGGAGGTCAAGGGAACCAACCAAACAAAACCTTTGTGAAGGTTTACAAGTCAGGGTCCTTCGGAAGATCGTTGGATATCACTAAATTCTCCAACTACCCCGAGCTACGTAGCGAGCTTGCTCGTATGTTTGGGCTTGAAGGTGAGTTGGAGGACCCTGTAAGATCAGGCTGGCAGCTTGTATTTGTTGATCAGGAGAATGATGTTCTTCTCCTCGGTGATGGTCCATGGCCGGAATTTGTAAATAGTGTATGGTGTATCAAGATACTTTCCCCTCAAGAAGTGCAGCAAATGGGGAACAATGGTCTAGAGCTTCTGAACTCAGCTCCAACTCAGAGGCTCTCCAATGGAATCTGTGATGACTACACCGGCCGCGAGGACTCAAATTTAAGCACCGGGTTAACAACTGTGGGGTCTTTAGACTACTGA 2826 0.4441 MKLSSAGFSPPPEEGEKRVLDSELWHACAGPLVSLPADGSRVVYFPQGHSEQVAVSTNREVDTYIPNPSLPPQLICQLHNLTMHADTETDEVYAQMTLQPLNPEEQKEAYHPAELGTANKQPTNYFCKILTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHGNDWKFKHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNDKNQLLLGIRRANRPQHMMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDSVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPAFHAGLKEDDYGMNSPLLWLRDADRGLQTLNFQGMGVNPWMQARLDPSMMNMQPDMYQAMAAAALQDMRTLDPSKQHPASLLQFQQPQNFTNGTAALMQNQMLQQSQPQQNFSKNQESQLPSQSQAQTQNFQQLLQNQHSFTNQNYQHLQQQQQLQQQQQQQQQQHHQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQVVDRQQISNAVSTMSQFVSAPQSQSTQPMQAISSIGNQQHFSDSNGNPATTAVVSPLHNMLGSFPNDETSHLLNLPRQNSWVPVQSSTAWPSKRIAVDPLLSSGASHYVLPQVEQLGQLQTTMSQNAITLPPFPGRECTIEANTDPQNHLLFGFNIEPSSHLVYNEMSNLKRVNSNCDSSAVPFQSSTYLNTTGADSSLNPGMTHSIGESGFLQTPENGGQGNQPNKTFVKVYKSGSFGRSLDITKFSNYPELRSELARMFGLEGELEDPVRSGWQLVFVDQENDVLLLGDGPWPEFVNSVWCIKILSPQEVQQMGNNGLELLNSAPTQRLSNGICDDYTGREDSNLSTGLTTVGSLDY 941
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04401 941 FunFam Auxin response factor 804 898 - -
Trre8g04401 941 Gene3D - 805 898 - -
Trre8g04401 941 CDD B3_DNA 125 226 IPR003340 GO:0003677
Trre8g04401 941 SUPERFAMILY DNA-binding pseudobarrel domain 111 255 IPR015300 -
Trre8g04401 941 Pfam AUX/IAA family 804 894 IPR033389 -
Trre8g04401 941 Gene3D - 290 362 - -
Trre8g04401 941 MobiDBLite consensus disorder prediction 484 508 - -
Trre8g04401 941 Pfam B3 DNA binding domain 126 227 IPR003340 GO:0003677
Trre8g04401 941 Coils Coil 533 582 - -
Trre8g04401 941 SMART B3_2 126 228 IPR003340 GO:0003677
Trre8g04401 941 Pfam Auxin response factor 252 335 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Trre8g04401 941 SUPERFAMILY CAD & PB1 domains 805 884 - -
Trre8g04401 941 FunFam Auxin response factor 290 362 - -
Trre8g04401 941 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677
Trre8g04401 941 Gene3D - 124 227 IPR015300 -
Trre8g04401 941 ProSiteProfiles PB1 domain profile. 809 893 IPR000270 GO:0005515
Trre8g04401 941 FunFam Auxin response factor 124 228 - -
Trre8g04401 941 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 898 IPR044835 GO:0003677|GO:0006355|GO:0009725
Trre8g04401 941 MobiDBLite consensus disorder prediction 775 808 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04401 Trre-Chr8 48380604 48386094 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04401 1 483 B3 DNA Binding Superfamily AT1G30330 84.458 0.0 825
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Trre8g04401 AUX_IAA 1.7e-06 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04401 - - psat:127108416 1643.63