Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04400 ATGAAACTTTCTTCAGCTGGGTTTAGTCCTCCACCTGAGGAAGGAGAAAAACGGGTTTTAGATTCGGAACTTTGGCATGCTTGTGCTGGTCCTCTTGTTTCTTTGCCGGCTGATGGAAGCCGCGTCGTTTACTTTCCACAAGGTCACAGTGAACAGGTTGCTGTATCTACCAACAGGGAAGTTGATACTTATATTCCGAATCCAAGTTTACCTCCCCAACTTATTTGTCAACTTCATAATTTGACTATGCATGCAGATACGGAGACAGATGAAGTGTATGCACAGATGACCTTGCAGCCTCTAAATCCTGAAGAGCAAAAAGAGGCTTATCATCCTGCAGAGTTGGGAACTGCAAACAAACAGCCAACAAACTATTTCTGCAAAATTTTGACAGCCAGTGATACAAGTACTCATGGTGGATTCTCTGTTCCTCGCCGGGCAGCTGAAAAAGTTTTTCCTCCACTGGACTTTTCACAACAACCTCCTGCTCAAGAGTTGATTGCAAGGGATTTGCATGGTAATGACTGGAAATTCAAACATATCTTCCGAGGCCAGCCCAAAAGGCATTTACTTACAACAGGATGGAGTGTCTTTGTGAGTGCTAAAAGACTTGTTGCTGGTGATTCAGTGCTGTTTATATGGAATGACAAAAATCAATTGCTTCTTGGAATTCGGCGTGCTAATCGACCCCAACATATGATGCCTTCATCAGTGTTGTCAAGTGATAGCATGCACTTAGGGTTGCTGGCTGCTGCAGCTCATGCAGCTGCAACGAACAGTCGTTTCACCATTTTCTATAACCCACGTGCTAGCCCATCTGAATTTGTCATACCCCTAGCAAAGTATGTTAAAGCTGTATATCATACTCGAGTTTCAGTTGGTATGCGCTTCAGGATGCTTTTTGAAACAGAGGAATCTAGTGTTCGGCGATACATGGGAACAATAACGGGCATCAGTGACCTGGATTCTGTCCGGTGGCCAAATTCACATTGGCGTTCAGTAAAGGTTGGCTGGGACGAATCCACTGCAGGTGAGAGGCAACCTAGAGTGTCTCTATGGGAAATTGAGCCACTAACAACATTTCCGATGTATCCATCTCCATTCCCCCTTAGGCTTAAAAGACCATGGCCTCCAGGATTGCCTGCATTCCATGGCTTGAAGGAGGATGATTATGGCATGAATTCTCCATTATTGTGGCTTCGAGATGCAGATAGAGGGCTTCAGACTCTTAATTTTCAAGGGATGGGTGTTAATCCTTGGATGCAGGCGAGGCTAGATCCGTCCATGATGAATATGCAACCAGACATGTACCAAGCTATGGCAGCTGCTGCACTTCAGGATATGAGGACTTTAGATCCTTCTAAACAGCATCCTGCCTCCTTACTTCAATTTCAGCAGCCACAGAATTTCACCAATGGTACTGCTGCTTTAATGCAAAACCAGATGTTGCAGCAATCTCAACCTCAGCAGAATTTTTCAAAGAATCAAGAAAGTCAACTTCCATCTCAATCTCAGGCTCAAACACAAAATTTTCAGCAGCTTCTTCAGAATCAGCACTCATTCACTAATCAAAATTATCAACATCTGCAGCAACAGCAACAACTACAACAGCAGCAACAACAACAACAACAACAACATCATCAACAGCAACAGCAACAGCAACAACAGCAACAACAACAACAACAGCAACAGCAACAACAACAACAACAACAGCAACAACAGCAACAACAGCAGCAGCAGCAAGTTGTAGATCGTCAGCAAATTTCAAATGCTGTCTCTACAATGTCTCAGTTTGTTTCGGCACCACAATCTCAATCAACGCAGCCAATGCAAGCTATCTCTTCAATCGGCAATCAGCAACATTTTTCTGATTCAAATGGGAACCCTGCTACTACTGCTGTTGTTTCTCCTTTGCACAATATGTTAGGTTCATTCCCCAATGACGAAACATCTCACCTTCTCAACCTTCCTAGACAAAACTCTTGGGTTCCTGTTCAATCTTCAACTGCATGGCCTTCGAAGCGCATTGCAGTTGATCCTCTCCTTTCTTCCGGAGCATCTCATTATGTTCTGCCTCAAGTTGAGCAGCTAGGGCAGTTACAGACTACCATGTCTCAAAATGCTATTACCTTGCCCCCATTTCCTGGTAGGGAGTGTACAATAGAAGCAAACACCGATCCACAAAACCATCTGTTGTTTGGTTTTAACATAGAGCCCTCATCACATCTAGTTTATAATGAGATGTCAAACCTTAAGAGGGTCAATAGCAACTGTGACTCATCAGCTGTACCTTTTCAATCTTCTACGTACCTGAATACAACAGGTGCCGATTCTTCATTGAATCCTGGAATGACACACAGCATTGGTGAGTCGGGCTTCCTGCAAACTCCAGAAAATGGAGGTCAAGGGAACCAACCAAACAAAACCTTTGTGAAGGTTTACAAGTCAGGGTCCTTCGGAAGATCGTTGGATATCACTAAATTCTCCAACTACCCCGAGCTACGTAGCGAGCTTGCTCGTATGTTTGGGCTTGAAGGTGAGTTGGAGGACCCTGTAAGATCAGGCTGGCAGCTTGTATTTGTTGATCAGGAGAATGATGTTCTTCTCCTCGGTGATGGTCCATGGCCGGAATTTGTAAATAGTGTATGGTGTATCAAGATACTTTCCCCTCAAGAAGTGCAGCAAATGGGGAACAATGGTCTAGAGCTTCTGAACTCAGCTCCAACTCAGAGGCTCTCCAATGGAATCTGTGATGACTACACCGGCCGCGAGGACTCAAATTTAAGCACCGGGTTAACAACTGTGGGGTCTTTAGACTACTGA 2823 0.4439 MKLSSAGFSPPPEEGEKRVLDSELWHACAGPLVSLPADGSRVVYFPQGHSEQVAVSTNREVDTYIPNPSLPPQLICQLHNLTMHADTETDEVYAQMTLQPLNPEEQKEAYHPAELGTANKQPTNYFCKILTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHGNDWKFKHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNDKNQLLLGIRRANRPQHMMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDSVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPAFHGLKEDDYGMNSPLLWLRDADRGLQTLNFQGMGVNPWMQARLDPSMMNMQPDMYQAMAAAALQDMRTLDPSKQHPASLLQFQQPQNFTNGTAALMQNQMLQQSQPQQNFSKNQESQLPSQSQAQTQNFQQLLQNQHSFTNQNYQHLQQQQQLQQQQQQQQQQHHQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQVVDRQQISNAVSTMSQFVSAPQSQSTQPMQAISSIGNQQHFSDSNGNPATTAVVSPLHNMLGSFPNDETSHLLNLPRQNSWVPVQSSTAWPSKRIAVDPLLSSGASHYVLPQVEQLGQLQTTMSQNAITLPPFPGRECTIEANTDPQNHLLFGFNIEPSSHLVYNEMSNLKRVNSNCDSSAVPFQSSTYLNTTGADSSLNPGMTHSIGESGFLQTPENGGQGNQPNKTFVKVYKSGSFGRSLDITKFSNYPELRSELARMFGLEGELEDPVRSGWQLVFVDQENDVLLLGDGPWPEFVNSVWCIKILSPQEVQQMGNNGLELLNSAPTQRLSNGICDDYTGREDSNLSTGLTTVGSLDY 940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04400 940 CDD B3_DNA 125 226 IPR003340 GO:0003677
Trre8g04400 940 SUPERFAMILY DNA-binding pseudobarrel domain 111 255 IPR015300 -
Trre8g04400 940 SUPERFAMILY CAD & PB1 domains 804 883 - -
Trre8g04400 940 Gene3D - 124 227 IPR015300 -
Trre8g04400 940 Gene3D - 290 362 - -
Trre8g04400 940 Coils Coil 532 581 - -
Trre8g04400 940 ProSiteProfiles PB1 domain profile. 808 892 IPR000270 GO:0005515
Trre8g04400 940 Pfam B3 DNA binding domain 126 227 IPR003340 GO:0003677
Trre8g04400 940 FunFam Auxin response factor 803 897 - -
Trre8g04400 940 SMART B3_2 126 228 IPR003340 GO:0003677
Trre8g04400 940 MobiDBLite consensus disorder prediction 774 807 - -
Trre8g04400 940 Pfam Auxin response factor 252 335 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Trre8g04400 940 MobiDBLite consensus disorder prediction 483 507 - -
Trre8g04400 940 Pfam AUX/IAA family 803 893 IPR033389 -
Trre8g04400 940 FunFam Auxin response factor 290 362 - -
Trre8g04400 940 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677
Trre8g04400 940 Gene3D - 804 897 - -
Trre8g04400 940 FunFam Auxin response factor 124 228 - -
Trre8g04400 940 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 897 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04400 Trre-Chr8 48380604 48386094 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04400 1 482 B3 DNA Binding Superfamily AT1G30330 84.631 0.0 830
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Trre8g04400 AUX_IAA 1.7e-06 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04400 - - psat:127108416 1648.25