Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04399 ATGGCGAAACAGATCCACGAGATCAAGGATTTTCTTCTGACGGCGCGTAGAAAGGACGCGAGATCAGTGAAAATCAAGAGAAGCAAGGATGTGGTTAAGTTCAAGGTTCGTTGCTCGAAGTATTTGTATACACTCTGTGTGTTTGATACTGACAAAGCTGATAAGTTGAAGCAATCTCTTCCTCCTGGTTTAACTGTTCAAGATCTGTAG 210 0.4238 MAKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDTDKADKLKQSLPPGLTVQDL 69
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04399 69 PANTHER 60S RIBOSOMAL PROTEIN L38 1 68 IPR002675 GO:0003735|GO:0005840|GO:0006412
Trre8g04399 69 FunFam 60S ribosomal protein L38 1 69 - -
Trre8g04399 69 Gene3D - 1 69 IPR038464 -
Trre8g04399 69 Pfam Ribosomal L38e protein family 3 68 IPR002675 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04399 Trre-Chr8 48375036 48375336 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04399 1 69 Cytoplasmic Ribosomal Protein Gene Family AT3G59540 91.304 2.30e-42 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04399 K02923 - atri:130800659 134.035