Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04380 ATGGAGGAGGAGGATGAGATTCAAGCACAACATAAATTCCCTAGAGTTGGAAATGAAGATGATAATGGAAATGGAACTGGAAGAAGAGATGTTAACAGATTCAATAGTTGGCATCATTCTTCAAGAATCATAAGGGTTTCAAGAGCTTCTGGTGGTAAAGATAGGCATAGTAAAGTTATGACTTCAAAGGGTTTAAGAGATAGAAGAGTTAGGCTTTCAGTTACAACAGCTATTCAATTTTATGATCTTCAAGATAGACTTGGTTATGATCAACCAAGTAAAGCTGTTGAATGGTTGATTAAATCAGCTTCTGATGCTATTTCTGAATTACCTTCACTTAACAATTCATTATTCAGTGATGATACACCTAATATTAATAATACTAATAATCAACCAAGTGAACAAGGTGTTGATTCAGCTGTTCATGATGCTGAAATGGTTATGGAAAATGGTGAAAATAATTATCATGGTCAGAATCTTTCTTTGTCTAAATCTGGTTGTAGTAGTACTTCTGAGACAAGTAAAGGTTCTGGTTTATCTCTTTCGAGATCCGATGTTCGTGTAAGCCGTGTTAAAGCTAGAGAAAGAGCAAGAGAAAGAACAGCTAAAGAGAAAGAAAAAGAGAATCATCATCATCATGATAATGTTAATCCTCATCAGCATCAGCATCATCATCAACATCACAATGTTAACTCTTCTATTTCTCAAACAGCTTCATTCACTGAACTTCTTACTGGTGGAATCAACAATGCAGTTCCTACCACAAATAGTCCAAGAGGGTCAGTTGATGAACCTAGTTTCTTCAACAAAGCAAGACAACAACAGCAGCAGCAATGGAATTCTTCAGCACCAATGGATCAGTACTTTGGTCCAGTGTTTCTAGGATCTTCATCATCAAGAACACATCAACAACATCATAATTTATTAGGACATTCACTACATGATCATCAAACAATGACAATGTCTAATAATAACGCAGTTTCACCGTTCAGTAGTGGTGAAAATCATTCAGCAGATCAGAATCATCAGCAGCGTCATTTGCAGCATCAATTTTCATTTTTACCTGATCATATGATGCAAAATGTGGTTACTTCTTCTTCTACTCAACCAAGCGGGAACAATGATTATAATCTTAATTTCACAATCTCTTCGGGCCTTGCTGGTTATAATAGGGGGACCCTTCAGTCCAATTCACCGTCTCTTTTGTCTCATCTTCAAAGGTTTTCAGTTTCACCTTTAGATGGATCCAACAATCTACCATTTTTCATGGGAGGAGGAGGAGCTGCTTCTGCTTCTCCTGCTTCAGCTTCACATGCTCCTACCACAATGGAGACTTGCAGCTCTATTCAGATCAGAAAGGGAAATCCAAAAACTGAAGAGTTTCACTTTTCCTCCATTTTCATCTTGCAGGGTAGGGACTTCAATAAAATGGAGTACTAG 1440 0.3729 MEEEDEIQAQHKFPRVGNEDDNGNGTGRRDVNRFNSWHHSSRIIRVSRASGGKDRHSKVMTSKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLIKSASDAISELPSLNNSLFSDDTPNINNTNNQPSEQGVDSAVHDAEMVMENGENNYHGQNLSLSKSGCSSTSETSKGSGLSLSRSDVRVSRVKARERARERTAKEKEKENHHHHDNVNPHQHQHHHQHHNVNSSISQTASFTELLTGGINNAVPTTNSPRGSVDEPSFFNKARQQQQQQWNSSAPMDQYFGPVFLGSSSSRTHQQHHNLLGHSLHDHQTMTMSNNNAVSPFSSGENHSADQNHQQRHLQHQFSFLPDHMMQNVVTSSSTQPSGNNDYNLNFTISSGLAGYNRGTLQSNSPSLLSHLQRFSVSPLDGSNNLPFFMGGGGAASASPASASHAPTTMETCSSIQIRKGNPKTEEFHFSSIFILQGRDFNKMEY 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04380 479 MobiDBLite consensus disorder prediction 187 215 - -
Trre8g04380 479 ProSiteProfiles TCP domain profile. 52 110 IPR017887 -
Trre8g04380 479 MobiDBLite consensus disorder prediction 153 234 - -
Trre8g04380 479 ProSiteProfiles R domain profile. 187 205 IPR017888 -
Trre8g04380 479 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 31 363 IPR005333 GO:0003700
Trre8g04380 479 Pfam TCP family transcription factor 51 207 IPR017887 -
Trre8g04380 479 MobiDBLite consensus disorder prediction 1 34 - -
Trre8g04380 479 MobiDBLite consensus disorder prediction 153 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04380 Trre-Chr8 48173045 48178615 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04380 32 429 TCP Transcription Factor Family AT4G18390 42.417 5.61e-70 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Trre8g04380 TCP 1.6e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04380 - - mtr:120577367 582.022