Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04342 ATGGATAAATCACATAGCTTTCTTCATAGTCTTATCAAACACTTCAAATTTGGTTCCACCACAGAGAGAAATAATGAAGTTGATTTACAAAGAATGGCTTCACAGGAGCAGAAGATATTTTCTTATGAAACCCTTGTTTCTGCCACTAAGAATTTTAATGCTATTCATAAGTTAGGTGAGGGAGGTTTTGGACCTGTCTTTAAGGGGAAATTGAGTGATGGGAGAGAAGTTGCAGTGAAGAAATTATCACAGACATCAAATCAAGGGAAGAAGGAGTTTATGAATGAGGCAAAGTTGTTGGCTCGTGTGCAGCATAAGAATGTAGTGAATTTGTTAGGTTATTGTGTTCATGGTGCAGAGAAGCTACTTGTTTATGAGTATGTTCCTCATGAGAGCCTTGACAAGCTTCTTTTCAGTAAGTGCTTTTTCTGCCTATTTTTTGTTTCACAAAATCAATCATGA 462 0.3658 MDKSHSFLHSLIKHFKFGSTTERNNEVDLQRMASQEQKIFSYETLVSATKNFNAIHKLGEGGFGPVFKGKLSDGREVAVKKLSQTSNQGKKEFMNEAKLLARVQHKNVVNLLGYCVHGAEKLLVYEYVPHESLDKLLFSKCFFCLFFVSQNQS 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04342 153 ProSiteProfiles Protein kinase domain profile. 52 153 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g04342 153 Gene3D Phosphorylase Kinase; domain 1 13 127 - -
Trre8g04342 153 Pfam Protein tyrosine and serine/threonine kinase 54 139 IPR001245 GO:0004672|GO:0006468
Trre8g04342 153 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 22 139 - -
Trre8g04342 153 FunFam Cysteine-rich receptor-like protein kinase 10 16 127 - -
Trre8g04342 153 SUPERFAMILY Protein kinase-like (PK-like) 27 142 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04342 Trre-Chr8 47826544 47827234 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04342 40 138 Receptor kinase-like Gene Family AT4G11530 57.576 4.30e-35 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre8g04342 PK_Tyr_Ser-Thr 1.8e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04342 - - gmx:100795769 232.261