Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04334 ATGGCTTTGTCTATACATAATAATCACTTTCACATAATCTCCTTGTTCTTGTTCTTGTTCTTGATTATTTTACCAACATCAATTTCCCAACAACAACATAAATATGAAGAGTGTCAAAAACCATACACATGTGGTGGATTATCCGAATACTATCCATTTTGGGGGCAAAGCAGACCAAATTATTGTGGCAGCTACACCAATCAATTTCACCTCAAATGTGATTCTCAAAACACATCTATTCAAATTGCTTCACAAAATTTCCATGTCTTACGCATTGATCAACTCGGTTACACCATCAAAATGTTTCGAAAAGGCCTTGTTTATGATAATTGTTCTTCGGCTTTAACCAACACTTCTTTAGACTCGAGGAACTTCCATTATATGCCTAATGTGAAAAACATCACAATTTTATATAACTGTCCTAATGATATCAAGTTTCTAAATGACACGAAAGCGAGCGTGAAATCATTTTCGTGCAAGGAAGATGAGAAAAAGCACGCTTTCTATGCGGATTCTGCATTAGCAGAAGGTATAAAATGTGACGGTGTTCGGATTGAAGTTCACGTAACACAGGAAGTGGAGCTTGGTGGTGGAATTGAAGGGTTGAACAAAGCTTTGAGTAGTGGATTTGATGTTAAATATTCTTTATATACTCAAGAATGCTTAAAATGTATTTTAAGTAATGGAACTTGTGGAGGGAATAATAGGTCTCAATTTTCCTGCTATTGTCCTGATGGAACTGAAGGTTTAGATTGTTCTCATCTCCACGACAATGGATGGAATTGGAAAAAGAAGTTTGGTGTAGGAGTTGCTGTTGTTGCTGTGGCCAGTGCAATTTTTGTAGGCATTGGCTTCTACATATATTATGGCAGAAAGAAGAAAAAGAACATTCATGCGGCATCATCGACTGCATTATCTCGTAGTATTTCTAGTTCTAGTTCAGAAAACTCTGAGAATGGAAGTAAATATCATGGAGTCCACTTCTTCACCTATAGTGAACTTGAAAAAGCCACAAACTACTTTGATTCTACCACAGCATTAGGAGATGGAGGCTTTGGCACAGTCTATTTCGGAAAACTCCGAGACGGGCGTTTGGTTGCGGTGAAACGAATGAACGAAAACAACTATAGAAGAGTTGAGCAATTTGTGAATGAAGTTGAGATCTTAACCGGTTTACACCATCAAAATCTTGTGTCACTATACGGATGCACTTCGCGCCACAGTCGTGAACTTCTGCTTGTATATGAATATGTTCCTAATGGAACTGTTGCTGATCATCTTCATGGTAAAAAAGCAAAACCTGGCATGCTACCTTGGCATATCAGAATGAACATTGCAATAGAAACTGCTAGTGCATTGGTATATCTTCATGCCACCGACATCATCCATAGAGATGTGAAAACAACCAACATTCTCCTTGACAGTCATTTTAGTGTCAAAGTAGGAGATTTTGGACTTTCGCGTCTATTTCCGATCCATGTTACGCATATTTCAACTGCTCCACAAGGGACTCCTGGTTACGTGGATCCGGAATACCATTTATACTATCAACTTACTGATAAAAGCGATGTATTTAGCTTCGGAGTTGTGTTGATTGAACTGATATCATCTATGCCTGCTGTCGATATCTTGAGGAATAAGCAAGATATCAATTTGTCTAACATGGCTATTAAGAAGATTCAAAATGGAACATTGCATGAGCTTGTTGATCCTACACTTGGTTTTGAGTCAGATTTTAAGGTAAGGAAAATGATCAATGCTGTAGCAGAGTTAGCATTTCAATGTTTGCAAAGTTCTAAAGATGTTAGACCTTCTATGGTTGAAGTGTTGGAAAGGCTTAAAGATATTCAGAGTGATGATGGAACATATAAATGTAAACCTGAAGTGTTGGATATATCAGTAGATGATGATATTACTTTGATAAAAAATGATCCACCACCATCATCACCAGATTCAAATATCATTATTTTCCCCTGA 1977 0.3733 MALSIHNNHFHIISLFLFLFLIILPTSISQQQHKYEECQKPYTCGGLSEYYPFWGQSRPNYCGSYTNQFHLKCDSQNTSIQIASQNFHVLRIDQLGYTIKMFRKGLVYDNCSSALTNTSLDSRNFHYMPNVKNITILYNCPNDIKFLNDTKASVKSFSCKEDEKKHAFYADSALAEGIKCDGVRIEVHVTQEVELGGGIEGLNKALSSGFDVKYSLYTQECLKCILSNGTCGGNNRSQFSCYCPDGTEGLDCSHLHDNGWNWKKKFGVGVAVVAVASAIFVGIGFYIYYGRKKKKNIHAASSTALSRSISSSSSENSENGSKYHGVHFFTYSELEKATNYFDSTTALGDGGFGTVYFGKLRDGRLVAVKRMNENNYRRVEQFVNEVEILTGLHHQNLVSLYGCTSRHSRELLLVYEYVPNGTVADHLHGKKAKPGMLPWHIRMNIAIETASALVYLHATDIIHRDVKTTNILLDSHFSVKVGDFGLSRLFPIHVTHISTAPQGTPGYVDPEYHLYYQLTDKSDVFSFGVVLIELISSMPAVDILRNKQDINLSNMAIKKIQNGTLHELVDPTLGFESDFKVRKMINAVAELAFQCLQSSKDVRPSMVEVLERLKDIQSDDGTYKCKPEVLDISVDDDITLIKNDPPPSSPDSNIIIFP 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04334 658 CDD STKc_IRAK 347 616 - -
Trre8g04334 658 ProSiteProfiles Protein kinase domain profile. 341 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g04334 658 Gene3D Phosphorylase Kinase; domain 1 311 417 - -
Trre8g04334 658 ProSitePatterns EGF-like domain signature 1. 241 252 IPR000742 -
Trre8g04334 658 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 13 653 IPR044652 GO:0004672
Trre8g04334 658 ProSitePatterns Serine/Threonine protein kinases active-site signature. 461 473 IPR008271 GO:0004672|GO:0006468
Trre8g04334 658 FunFam Wall-associated receptor kinase-like 20 418 625 - -
Trre8g04334 658 FunFam receptor-like protein kinase FERONIA 302 417 - -
Trre8g04334 658 Gene3D Transferase(Phosphotransferase) domain 1 418 626 - -
Trre8g04334 658 Pfam Protein kinase domain 344 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g04334 658 SMART serkin_6 341 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g04334 658 ProSitePatterns Protein kinases ATP-binding region signature. 347 369 IPR017441 GO:0005524
Trre8g04334 658 SUPERFAMILY Protein kinase-like (PK-like) 315 613 IPR011009 -
Trre8g04334 658 Pfam Wall-associated receptor kinase C-terminal 178 246 IPR032872 -
Trre8g04334 658 Pfam Wall-associated receptor kinase galacturonan-binding 38 101 IPR025287 GO:0030247
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04334 Trre-Chr8 47774858 47777936 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04334 40 652 Receptor kinase-like Gene Family AT1G25390 43.243 3.49e-145 434
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Trre8g04334 Pkinase 8.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04334 - - vra:106766190 830.861