Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04332 ATGATGACTCCAAACTTGAACTTGGAACCTGAAAATCAGTCACAAGCACCTAATGATCATCTAGATGCTATGACCCTTGATTTGACACTCAATTTCAGTTCTAGTGACAGCGAGTTAAAGGGTTCGAGTGATGCTAGCAGTGAAGTAGGAGCTGGTGAAGATCACGCTGCGCCAAATGTAACTCCGAGGGTTTTCTCTTGTAATTACTGCAAGAGGAAGTTCTTTAGCTCGCAAGCGTTAGGAGGTCATCAAAATGCTCACAAAAGGGAAAGAACGATGGCTAAACGCGCAATGAGAATGGGAATGTTCACCGAAAGGTATACAAGTCTAGCATCTCTGCCTCTTCATGGTTCACCTTTTCGGTCCCTCGGTGTTGAAGCTCATTCTGCAATGCATCAAAGAAGTCATATGCAACCATCATCATCAATGAGGGCTCCTGATATGAGAGCTGCTGCAAAATTTGATAGAAACCACTTCGGATCATTAGTTCTCGTGGAAGACGATGATGTAGGATTCTTTTGGCCCGGAAGTTTCAGACAGGTGGATCAAGGAGGTGGTATTAATATCGGACAACCTCAAACTTCAAATTCTAGTTTTGTTCCAATGGAACCTCCTCCGCCGCAAGCATCTGCATCTCCTGATCTCACATTAAAGTTATAA 660 0.4364 MMTPNLNLEPENQSQAPNDHLDAMTLDLTLNFSSSDSELKGSSDASSEVGAGEDHAAPNVTPRVFSCNYCKRKFFSSQALGGHQNAHKRERTMAKRAMRMGMFTERYTSLASLPLHGSPFRSLGVEAHSAMHQRSHMQPSSSMRAPDMRAAAKFDRNHFGSLVLVEDDDVGFFWPGSFRQVDQGGGINIGQPQTSNSSFVPMEPPPPQASASPDLTLKL 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04332 219 MobiDBLite consensus disorder prediction 184 198 - -
Trre8g04332 219 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 24 161 IPR044246 GO:0009788
Trre8g04332 219 Gene3D Classic Zinc Finger 53 112 - -
Trre8g04332 219 MobiDBLite consensus disorder prediction 183 219 - -
Trre8g04332 219 MobiDBLite consensus disorder prediction 35 58 - -
Trre8g04332 219 ProSiteProfiles Zinc finger C2H2 type domain profile. 65 92 IPR013087 -
Trre8g04332 219 FunFam Zinc finger protein 2 40 111 - -
Trre8g04332 219 ProSitePatterns Zinc finger C2H2 type domain signature. 67 87 IPR013087 -
Trre8g04332 219 SUPERFAMILY beta-beta-alpha zinc fingers 62 93 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04332 Trre-Chr8 47760680 47761339 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04332 58 219 C2H2 Transcription Factor Family AT1G66140 44.974 2.85e-43 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre8g04332 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04332 - - gmx:100775305 326.635