Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04330 ATGAGGAATGTTTCAAGACCAGAGAGAATTGTTAGGGAGATTGTTTCGGAATCGATCCCTATTGTTTCGATGACAATTCAGGAGCTTACCGATGAAGTCATAGCATCAACTAAGGAATATTTGAAGAATCTGATTGAGAATAAGAAAGAAGAATTGGTCAGCCTTCAAAACCGGCTTGAGAGAAGGTCTGATCTTACCAAGGAGACTCTTTCAAAGTGCAATAAAGTTCAACTAGAGATTTTAGTTGCTGTCAAGATGGGACTGTCGAGCTTCTTATACGGTAATCTTCAATTATCTGAGATGGTAGAGGTTTACTTGTATAGGAGATGTAGAAATGTTACCTGCAAGAGTTTGCTTCCTGTTGATGACTGTGACTGTAAGATTTGTGTGGGAAATAAAGGGTTCTGTAGTTCTTGTATGTGTCCTATTTGTTTGAACTTTGATTGTGCAAGCAATACTTGTAGTTGGATTGGATGTGATGTTTGTTCACATTGGTGCCATGCTGTTTGTGGCATCCAGAAGAAGCTTATCAAACCAGGACCAAGCTTGAAGGGTCCTTCTGGTACCTCGGAAATGCAGTTTCATTGTATTGGATGTGGACATGCCTCGGAGATGTTTGGATTTGTTAAAGATGTGTTCATGTGTTGTGCAAAGGATTGGGGAGTTGAAACCTTGTTGAAAGAGCTTGACTGTGTGAGGAGGATTTTCATGGGAAGTGAAGATCGCAAAGGAAAAGAATTGCATTTTAAAACCGATGACTTGCTATTAAAGCTTCAAACTAAAATAGTATCTCCTTCAGATGCATGCAATTACATCATGCAATTTTTCAGCTATGCTGAAAGCATGGCAAACTTTCCGGTTCCGGCTTCTGGTTTTTCTTCAAAGGAATTGATAGGATCTCAAGCCAACCATCCAAAGGACGTACTATCTCTTCCGAAATCTAGTTCTTCAATACCAAAATACGCTTACGACTCGAACTATTCTAGGCCACATTCCAGTGCCCCGTCAAAAGATCTTCATCAAAAAGACCTTAAAGCTTCCATCTTAAGCGAACTAAAAAATGATGCTGATCTTCAATTGGCGGCTTTACTAAGCAAAGGTGGAATTGAAAGTTTGGAGAGCATTGTTCGGATAAAGGAGGCAGAAGCCAAAATGTTCCAAACCAAAGCAGATGAAGCGAGGAGAGAAGCAGAAGGGTTCCAAAAGATGATCAGGACAAAGACTGCACAGATGGAAGAAGAGTATGCTACAAAACTTTCGAAACTATGTCTGAATGAAACCGAGGAATCACAGAGGAGGAAATTGGATGAGCTGAAAGTTGTGGAAAATTCCTATATTGATTACTTTAAAATGAAAAAGAGAATGCAAGATGATATTGATGGTTTGTTGCAGAGAATGGAAGCAACAAAGCAGCATTGGGTTTAA 1425 0.3958 MRNVSRPERIVREIVSESIPIVSMTIQELTDEVIASTKEYLKNLIENKKEELVSLQNRLERRSDLTKETLSKCNKVQLEILVAVKMGLSSFLYGNLQLSEMVEVYLYRRCRNVTCKSLLPVDDCDCKICVGNKGFCSSCMCPICLNFDCASNTCSWIGCDVCSHWCHAVCGIQKKLIKPGPSLKGPSGTSEMQFHCIGCGHASEMFGFVKDVFMCCAKDWGVETLLKELDCVRRIFMGSEDRKGKELHFKTDDLLLKLQTKIVSPSDACNYIMQFFSYAESMANFPVPASGFSSKELIGSQANHPKDVLSLPKSSSSIPKYAYDSNYSRPHSSAPSKDLHQKDLKASILSELKNDADLQLAALLSKGGIESLESIVRIKEAEAKMFQTKADEARREAEGFQKMIRTKTAQMEEEYATKLSKLCLNETEESQRRKLDELKVVENSYIDYFKMKKRMQDDIDGLLQRMEATKQHWV 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04330 474 Pfam Coiled-coil region of Oberon 336 463 IPR032535 -
Trre8g04330 474 Coils Coil 38 65 - -
Trre8g04330 474 CDD PHD_OBE1_like 140 199 IPR047578 -
Trre8g04330 474 PIRSF UCP025218 1 474 - -
Trre8g04330 474 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 2 473 IPR004082 -
Trre8g04330 474 Coils Coil 376 410 - -
Trre8g04330 474 Coils Coil 452 472 - -
Trre8g04330 474 Pfam PHD - plant homeodomain finger protein 110 234 IPR032881 -
Trre8g04330 474 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 25 47 IPR004082 -
Trre8g04330 474 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 409 431 IPR004082 -
Trre8g04330 474 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 370 390 IPR004082 -
Trre8g04330 474 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 220 239 IPR004082 -
Trre8g04330 474 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 101 122 IPR004082 -
Trre8g04330 474 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 147 167 IPR004082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04330 Trre-Chr8 47740439 47742928 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04330 110 207 PHD Gene Family AT5G57380 29.592 2.89e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04330 - - gmx:100791188 786.949