Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04329 ATGATTGCAAGTAAAGATCATCGTAATGGTGTTGCTGACTCTGATGGTGAAACCTCCAGGAACAAATTGTCAAGACCCAATTTTGAGCCTAACAAAGGTTACCCAGATGACAAAGATGTTGTTTTTCTCAGAGATTCACAGATGGGTGGTGCTGCTTCTGCTGTTGCTGGCCAAGAACTAACCCTCAGCTATCTCTGTGGAAACCCAAAATTGAATCTTGCTGATAAAGAGATTCATGGTGAAACTTTTCTGATGAGTCAAAAGGGTAAAGAGATTATGGTTTCTGAGAATTCAAATCAAGATGGAAAATGGGTTGAAAGAGATTTTCTTAGTTTGAGTGAAACAAGAGAGGATTCTTCAAAGAGATCTGTTGAAGAAGATGTTGAAAGAGAAAATAATAGAGATAAAAAACCAAAGCTTGAGACATTGAATCTCTCTCTTGCTTTACCTGATGTTTCTCTTTCTCTCACTGCTTCAAACGCTGTACACAACAACAATGGTGATCAACAACAAAATCATCAACTAGTTAGAGCAAAACCTAGCAGGCCTTCAACTACACATACTTCATATTCAAATGATTATACAGCAGCACCTTCTTTGTCTTATTCTTATTCACACCCTTTTTCACATAATCCAAGTTGTTCTTTAACTCGCAATTCGACCGATAATTTTGATTATTCTGTTAGTAAAGATGATCAAATTTGGAATTGTGGTGAAGGGACTAATGGTTCTGTTCATAGCAGGTTTAAACCTATTGGAGATGGTGTTGTTGCTTTGTCAAATCATGGTGGTGGAACTAGTCTTAGTTCATTCATGCAGCAAGGTAATAATAATAATAGTCAGTATAAAACTACTAGTTCAGAAAATCATTCATTTTTTCCTTCTGAATTGCCTGCTAGACCTAGATTTGAAACTCATTCGGGGGATTCTCGGGGAAGGAATTCTGAGAATATGAGAGGGTTTGAAGGTTTAGATGGTGGTAAGATGAGGAATGTTTCAAGACCAGAGAGAATTGTTAGGGAGATTGTTTCGGAATCGATCCCTATTGTTTCGATGACAATTCAGGAGCTTACCGATGAAGTCATAGCATCAACTAAGGAATATTTGAAGAATCTGATTGAGAATAAGAAAGAAGAATTGGTCAGCCTTCAAAACCGGCTTGAGAGAAGGTCTGATCTTACCAAGGAGACTCTTTCAAAGTGCAATAAAGTTCAACTAGAGATTTTAGTTGCTGTCAAGATGGGACTGTCGAGCTTCTTATACGGTAATCTTCAATTATCTGAGATGGTAGAGGTTTACTTGTATAGGAGATGTAGAAATGTTACCTGCAAGAGTTTGCTTCCTGTTGATGACTGTGACTGTAAGATTTGTGTGGGAAATAAAGGGTTCTGTAGTTCTTGTATGTGTCCTATTTGTTTGAACTTTGATTGTGCAAGCAATACTTGTAGTTGGATTGGATGTGATGTTTGTTCACATTGGTGCCATGCTGTTTGTGGCATCCAGAAGAAGCTTATCAAACCAGGACCAAGCTTGAAGGGTCCTTCTGGTACCTCGGAAATGCAGTTTCATTGTATTGGATGTGGACATGCCTCGGAGATGTTTGGATTTGTTAAAGATGTGTTCATGTGTTGTGCAAAGGATTGGGGAGTTGAAACCTTGTTGAAAGAGCTTGACTGTGTGAGGAGGATTTTCATGGGAAGTGAAGATCGCAAAGGAAAAGAATTGCATTTTAAAACCGATGACTTGCTATTAAAGCTTCAAACTAAAATAGTATCTCCTTCAGATGCATGCAATTACATCATGCAATTTTTCAGCTATGCTGAAAGCATGGCAAACTTTCCGGTTCCGGCTTCTGGTTTTTCTTCAAAGGAATTGATAGGATCTCAAGCCAACCATCCAAAGGACGTACTATCTCTTCCGAAATCTAGTTCTTCAATACCAAAATACGCTTACGACTCGAACTATTCTAGGCCACATTCCAGTGCCCCGTCAAAAGATCTTCATCAAAAAGACCTTAAAGCTTCCATCTTAAGCGAACTAAAAAATGATGCTGATCTTCAATTGGCGGCTTTACTAAGCAAAGGTGGAATTGAAAGTTTGGAGAGCATTGTTCGGATAAAGGAGGCAGAAGCCAAAATGTTCCAAACCAAAGCAGATGAAGCGAGGAGAGAAGCAGAAGGGTTCCAAAAGATGATCAGGACAAAGACTGCACAGATGGAAGAAGAGTATGCTACAAAACTTTCGAAACTATGTCTGAATGAAACCGAGGAATCACAGAGGAGGAAATTGGATGAGCTGAAAGTTGTGGAAAATTCCTATATTGATTACTTTAAAATGAAAAAGAGAATGCAAGATGATATTGATGGTTTGTTGCAGAGAATGGAAGCAACAAAGCAGCATTGGGTTTAA 2409 0.3856 MIASKDHRNGVADSDGETSRNKLSRPNFEPNKGYPDDKDVVFLRDSQMGGAASAVAGQELTLSYLCGNPKLNLADKEIHGETFLMSQKGKEIMVSENSNQDGKWVERDFLSLSETREDSSKRSVEEDVERENNRDKKPKLETLNLSLALPDVSLSLTASNAVHNNNGDQQQNHQLVRAKPSRPSTTHTSYSNDYTAAPSLSYSYSHPFSHNPSCSLTRNSTDNFDYSVSKDDQIWNCGEGTNGSVHSRFKPIGDGVVALSNHGGGTSLSSFMQQGNNNNSQYKTTSSENHSFFPSELPARPRFETHSGDSRGRNSENMRGFEGLDGGKMRNVSRPERIVREIVSESIPIVSMTIQELTDEVIASTKEYLKNLIENKKEELVSLQNRLERRSDLTKETLSKCNKVQLEILVAVKMGLSSFLYGNLQLSEMVEVYLYRRCRNVTCKSLLPVDDCDCKICVGNKGFCSSCMCPICLNFDCASNTCSWIGCDVCSHWCHAVCGIQKKLIKPGPSLKGPSGTSEMQFHCIGCGHASEMFGFVKDVFMCCAKDWGVETLLKELDCVRRIFMGSEDRKGKELHFKTDDLLLKLQTKIVSPSDACNYIMQFFSYAESMANFPVPASGFSSKELIGSQANHPKDVLSLPKSSSSIPKYAYDSNYSRPHSSAPSKDLHQKDLKASILSELKNDADLQLAALLSKGGIESLESIVRIKEAEAKMFQTKADEARREAEGFQKMIRTKTAQMEEEYATKLSKLCLNETEESQRRKLDELKVVENSYIDYFKMKKRMQDDIDGLLQRMEATKQHWV 802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04329 802 Coils Coil 366 393 - -
Trre8g04329 802 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 85 801 IPR004082 -
Trre8g04329 802 Pfam Coiled-coil region of Oberon 665 791 IPR032535 -
Trre8g04329 802 MobiDBLite consensus disorder prediction 1 22 - -
Trre8g04329 802 MobiDBLite consensus disorder prediction 271 293 - -
Trre8g04329 802 Coils Coil 704 738 - -
Trre8g04329 802 MobiDBLite consensus disorder prediction 1 39 - -
Trre8g04329 802 MobiDBLite consensus disorder prediction 161 192 - -
Trre8g04329 802 Coils Coil 780 800 - -
Trre8g04329 802 MobiDBLite consensus disorder prediction 114 139 - -
Trre8g04329 802 MobiDBLite consensus disorder prediction 271 329 - -
Trre8g04329 802 CDD PHD_OBE1_like 468 527 IPR047578 -
Trre8g04329 802 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 429 450 IPR004082 -
Trre8g04329 802 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 353 375 IPR004082 -
Trre8g04329 802 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 737 759 IPR004082 -
Trre8g04329 802 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 475 495 IPR004082 -
Trre8g04329 802 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 548 567 IPR004082 -
Trre8g04329 802 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 698 718 IPR004082 -
Trre8g04329 802 Pfam PHD - plant homeodomain finger protein 438 562 IPR032881 -
Trre8g04329 802 MobiDBLite consensus disorder prediction 302 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04329 Trre-Chr8 47740439 47743912 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04329 438 535 PHD Gene Family AT5G57380 29.592 6.53e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04329 - - gmx:100820216 1253.04