Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04325 ATGGGAAGAGTTCGCACAAAAACCGTCAAAAAATCCTCCCGTCAAGTCATCGAGAGGTACTACTCTCGAATGACACTCGATTTCCACACCAACAAGAAAATCCTCGAAGAAGTTGCTCTCATTCCATCAAAGCGCCTCCGTAACAAAATCGCCGGATTCTCCACTCATCTCATGAAGCGTATCCAGAAAGGACCAGTTCGTGGAATCTCATTGAAGCTGCAAGAGGAAGAGCGTGAGCGTCGTATGGATTTCGTCCCCGATGTTTCCGCCATTAGGACTGATCACATCGAAGTTGATAAGGAAACACTAGACATGATTGCTGCACTCGGTATGTCTGAACTTCCCGGTGTTGTTCAGGTTGATCCAGTTCCGGTTCAGCAGATCCCATTCGGACGTGGTGCTGGTGGTGCTGGTGGAAGGAGGAGGAATACTATCAAGATAAATGCGACTAGACCAAGAAATGGCCGCCCTAGCTAA 477 0.4822 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVALIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDVSAIRTDHIEVDKETLDMIAALGMSELPGVVQVDPVPVQQIPFGRGAGGAGGRRRNTIKINATRPRNGRPS 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04325 158 PANTHER 40S RIBOSOMAL PROTEIN S17 1 123 IPR001210 GO:0003735|GO:0005840|GO:0006412
Trre8g04325 158 Hamap 30S ribosomal protein S17e [rps17e]. 1 63 IPR001210 GO:0003735|GO:0005840|GO:0006412
Trre8g04325 158 Gene3D - 1 62 IPR036401 GO:0003735|GO:0005840|GO:0006412
Trre8g04325 158 SUPERFAMILY Rps17e-like 1 62 IPR036401 GO:0003735|GO:0005840|GO:0006412
Trre8g04325 158 FunFam 40S ribosomal protein S17 1 62 - -
Trre8g04325 158 MobiDBLite consensus disorder prediction 130 158 - -
Trre8g04325 158 ProSitePatterns Ribosomal protein S17e signature. 41 56 IPR018273 GO:0003735|GO:0005840|GO:0006412
Trre8g04325 158 Pfam Ribosomal S17 1 120 IPR001210 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04325 Trre-Chr8 47703916 47704986 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04325 1 141 Cytoplasmic Ribosomal Protein Gene Family AT5G04800 79.720 7.92e-77 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04325 K02962 - cpap:110810532 238.81