Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04314 ATGCAACTTCCCATTGTTGTTGCTGTTGCAGCAACAACATCACTCGTTGCATTATTCATCATCGGATTCATCATCTTCCGTTGTCTAAAAAAACCTACAGCAAGAGACAAAACTCAAGAACCCGAAAACACGTGTCTTCACTTTTCCATCGAAGAAATAAGAATCGCCACCAAAAACTTCAACGACGGTTTAATCATCGGTAACGGAGGTTTCGGAAACGTTTACAAAGGAAACATTGAAAGATGTCACGCACCGGTTGCCATTAAGCGGCTCAGACCGGGTTCAGATCAAGGCGCACATGAGTTTCGAACCGAAATCGAATTGCTCTCGCGGTTTCGTCACCCTCATTTAGTTTCTCTAATCGGTTACTGTAACGAAGGTGGAGAAATGATTCTGGTTTACGATTTCATGGCGCGTGGTACACTACGCGATCATCTGTACGGTTCAAAAGTCCCGCTCTCGTGGAATCGACGGCTTGAGATCTGTCTCGGTGCAGCGCGTGGGATTCAGTTTCTCCACGCGGGGGTTAATGATGATAAACGGATGGTTATTCACCGTGACGTGAAGAGTACGAATATTCTTTTGGATGAGAATTGGGTTGCGAAGGTTTCGGATTTCGGGTTATCGAAAGATGGACCAAACGGGTCGACCCATGTTACAACTGATGTTAAGGGTAGTATTGGGTATTTGGATCCTGAATATTATGTGAGTCAATGGTTGAGTCAAAAATCTGACGTGTACTCTTTTGGTGTGGTTTTGTTGGAGGTATTGTGTGGGAGACCACCTATTAAGAGTAGGGTGGACAAGCATGAGGAGTCTTTGGTGGGTTGGTTTAAGAAGTGTTTTGATGAAGGTAAAGTTGATCGAACGGTTGATCCTGTTTTGAAGGGAACGATTAAGATTAAGTGTTTGATGAAATTTGTTGAGGTTGCGTTGAGTTGTTTGCATCATCATGGAAAGCAACGGCCTCTGATGAGAGATGTTGTCATGGGGTTGGAGTGTGCGTGGAATTTGCAACATGGTGGGGCCCATGTTAAGGGAAAGGAAAAGATTCGAAAGAGTGAGGAGGAGAAGGAAATTGAGGTTGAAAGTTTTGGGAGAGTAGAGGAGTGTAGTAGTAGCAAGGGCACAACAATAACATCAACATGCAGTGAGGAAGAGCAAGCTTTGGTGATGGTTGGGGGGATTCATGAGAGCTTGGATATCCCATAG 1212 0.4455 MQLPIVVAVAATTSLVALFIIGFIIFRCLKKPTARDKTQEPENTCLHFSIEEIRIATKNFNDGLIIGNGGFGNVYKGNIERCHAPVAIKRLRPGSDQGAHEFRTEIELLSRFRHPHLVSLIGYCNEGGEMILVYDFMARGTLRDHLYGSKVPLSWNRRLEICLGAARGIQFLHAGVNDDKRMVIHRDVKSTNILLDENWVAKVSDFGLSKDGPNGSTHVTTDVKGSIGYLDPEYYVSQWLSQKSDVYSFGVVLLEVLCGRPPIKSRVDKHEESLVGWFKKCFDEGKVDRTVDPVLKGTIKIKCLMKFVEVALSCLHHHGKQRPLMRDVVMGLECAWNLQHGGAHVKGKEKIRKSEEEKEIEVESFGRVEECSSSKGTTITSTCSEEEQALVMVGGIHESLDIP 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04314 403 PANTHER OS07G0166700 PROTEIN 44 339 IPR045272 GO:0004714|GO:0006468
Trre8g04314 403 Gene3D Transferase(Phosphotransferase) domain 1 137 358 - -
Trre8g04314 403 FunFam Receptor-like protein kinase FERONIA 137 357 - -
Trre8g04314 403 SMART serkin_6 60 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g04314 403 CDD STKc_IRAK 66 333 - -
Trre8g04314 403 SUPERFAMILY Protein kinase-like (PK-like) 43 330 IPR011009 -
Trre8g04314 403 ProSiteProfiles Protein kinase domain profile. 60 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g04314 403 ProSitePatterns Serine/Threonine protein kinases active-site signature. 183 195 IPR008271 GO:0004672|GO:0006468
Trre8g04314 403 Gene3D Phosphorylase Kinase; domain 1 26 136 - -
Trre8g04314 403 ProSitePatterns Protein kinases ATP-binding region signature. 66 89 IPR017441 GO:0005524
Trre8g04314 403 FunFam Receptor-like protein kinase FERONIA 33 136 - -
Trre8g04314 403 Pfam Protein tyrosine and serine/threonine kinase 65 330 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04314 Trre-Chr8 47618421 47619632 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04314 41 339 Receptor kinase-like Gene Family AT3G51550 58.140 1.91e-116 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Trre8g04314 PK_Tyr_Ser-Thr 2.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04314 - - cam:101489535 587.8