Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04297 ATGGATGATGATGTGCTGAATATGCCGAATTGGGGTTACTATGAACCCTTCAAGGCGGGGAATCTCGGTCTGAACCTCATGCCTGGTATGAATGATCGTGAAACAAAACCATTTTTTCCTCCTGGTCGTGATCCAGCTATGTTAGTTGGTGCAAATGGAACTTTTCACCCTCGAGATAATGTTGCTGCTGTTGAGACTCCGAATCCATTGAACTATGGAAGAGATAATTGGATGAACCAGAGACCTAGGTTTTATAACATGCAGGTCGCCAATCCAAATTATGCTGTTCCTTCTGAAACATCGCAAGGACCGTCCTTTCCGTTTATCCCATCTGCTGTTGCTGATCCACCAAGAAATGAGAATGTGGATGAAATTGAAGATTTGGCTGTTAAGAAGGAAGGTGGCAAGTCGAAGAAAAGGAAATCTAAGGCTGCTGCTGTTACCACTCCAAAAGCTAAGAAACCCAGGAAGCAGAAGGATAATAGCAATGCTTCAGCTCAAGGTGTGAAACCACCGAAGAAGACTGTGGCACTTGAAATCAATGGAATTGAAATGGACATTTCTGGTCTACCTGTTCCAGTTTGTTCCTGCACTGGGAATCCGCAGCAGTGTTATCGATGGGGCTGTGGAGGTTGGCAATCTGCTTGTTGTACTACAAATGTGTCAATTTATCCTTTGCCGATGAGCATCAAAAGGCGTGGTGCAAGGATAGCTGGGAGGAAGATGAGCCAAGGGGCATTCAAAAAGGTTTTGGAAAAGCTTGCCGCTCAAGGTTACAATTTTGCTAACCCTATTGATCTGAAGACTCACTGGGCTAGACATGGCACCAACAAGTTTGTCACTATCAGATAA 852 0.4448 MDDDVLNMPNWGYYEPFKAGNLGLNLMPGMNDRETKPFFPPGRDPAMLVGANGTFHPRDNVAAVETPNPLNYGRDNWMNQRPRFYNMQVANPNYAVPSETSQGPSFPFIPSAVADPPRNENVDEIEDLAVKKEGGKSKKRKSKAAAVTTPKAKKPRKQKDNSNASAQGVKPPKKTVALEINGIEMDISGLPVPVCSCTGNPQQCYRWGCGGWQSACCTTNVSIYPLPMSIKRRGARIAGRKMSQGAFKKVLEKLAAQGYNFANPIDLKTHWARHGTNKFVTIR 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04297 283 MobiDBLite consensus disorder prediction 135 152 - -
Trre8g04297 283 MobiDBLite consensus disorder prediction 119 134 - -
Trre8g04297 283 Pfam GAGA binding protein-like family 1 283 IPR010409 -
Trre8g04297 283 PANTHER - 1 283 IPR010409 -
Trre8g04297 283 MobiDBLite consensus disorder prediction 95 173 - -
Trre8g04297 283 SMART GAGA_bind_2 1 283 IPR010409 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04297 Trre-Chr8 47495892 47496743 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04297 1 283 BBR or BPC Transcription factor family AT2G01930 55.034 6.75e-101 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BBR-BPC Trre8g04297 GAGA_bind 1.1e-95 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04297 - - gmx:100791533 422.935