Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04296 ATGTTAGACAACAACAACACTGCTACTAATTCCTCTTCTGATACTGCTTTTGCATTATCAGAAAATGGGGGTGCTAATAACAAAAGAAAAAGAAGACCAGCCGGCACACCAGATCCGGATGCTGAAGTTGTGTCTTTGTCACCAAAGACTTTGTTAGAATCTGATAGATATGTTTGTGAGATCTGTAACCAAGGTTTTCAAAGAGACCAGAATCTTCAAATGCATAGGAGAAGACACAAAGTACCATGGAAATTATTGAAAAGAGAAACAACACAAGGATTAAAAAAGAGAGTTTTTGTTTGTCCAGAACCAAGTTGTTTACATCATGATCCTTGTCATGCACTTGGTGATCTTGTTGGAATTAAGAAACATTTTAGAAGAAAACATAGTAATCATAAACAATGGGTTTGTGATAAATGTAACAAAGGTTATGCTGTTCAATCTGATTATAAAGCTCATATCAAAACTTGTGGTACCAGAGGACATTCGTGTGATTGTGGTCGTGTGTTTTCCAGGGTGGAGAGTTTCATAGAACATCAAGATGCATGCACTATAAGAGGGAAGCACCAACCAGATTTACAAGCTACAACAATGCAACCAGCATGCTCTTCTAGAACAGCTTCAAGCACAAGTCCATCAAGCGAGGCGAATTTTAGTATATCGGCTCCATTACAAGGACTACCAGTACTTCCAAAACCACCTGATAAACCATCATCAACACCTACCTTATTAACAAATTCAGATATACACAACAAACCTTCCACCTCTCATCATCACCATAACTTAGAACTTCAACTCCTATCACCTTCTTCTATAAAACCTCAAGCAGAAAAACCAAGTTCAAAAGATATTCAAAACTATGAAACAACTCATTTGAAACTTTCAATAGGGGGTAACAATGAATCTGATAAACAAAGGAATTACAATTCTACATTGGAAGTAGCAAGGTTGAAGGAGTTTACTAATGAGGAGCTAAAATTGGCAATGTCAGAAAAGGTTTATGCAGAAGAAGCTAGAAAAGAAGCTAAAAGACAAATTGAGATAGCTGAAGTTGAGTTTGAGAATGCTAAAAGAATAAGGAAACAAGCGCAAGATGAACTTGGAAAAGCTGAAGCTTTGAGAAAACAAGCTGTTAAGAAAATAAGTAACACTGTTATGGAAATAACATGTCAAGCTTGTAAGCAACAGTTTCAATCTTCAACTTCTGGTGTTCCATCAGAAGAAACATCTATTGTTATGGGTTACATGTCTTCAGCAACCACAGAAGGAGAAGCAGAATGA 1281 0.3661 MLDNNNTATNSSSDTAFALSENGGANNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETTQGLKKRVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCDKCNKGYAVQSDYKAHIKTCGTRGHSCDCGRVFSRVESFIEHQDACTIRGKHQPDLQATTMQPACSSRTASSTSPSSEANFSISAPLQGLPVLPKPPDKPSSTPTLLTNSDIHNKPSTSHHHHNLELQLLSPSSIKPQAEKPSSKDIQNYETTHLKLSIGGNNESDKQRNYNSTLEVARLKEFTNEELKLAMSEKVYAEEARKEAKRQIEIAEVEFENAKRIRKQAQDELGKAEALRKQAVKKISNTVMEITCQACKQQFQSSTSGVPSEETSIVMGYMSSATTEGEAE 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04296 426 MobiDBLite consensus disorder prediction 1 22 - -
Trre8g04296 426 MobiDBLite consensus disorder prediction 397 417 - -
Trre8g04296 426 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Trre8g04296 426 SMART c2h2final6 135 162 IPR013087 -
Trre8g04296 426 SMART c2h2final6 99 129 IPR013087 -
Trre8g04296 426 SMART c2h2final6 57 79 IPR013087 -
Trre8g04296 426 MobiDBLite consensus disorder prediction 397 426 - -
Trre8g04296 426 MobiDBLite consensus disorder prediction 1 44 - -
Trre8g04296 426 MobiDBLite consensus disorder prediction 194 221 - -
Trre8g04296 426 Gene3D Classic Zinc Finger 35 100 - -
Trre8g04296 426 MobiDBLite consensus disorder prediction 194 260 - -
Trre8g04296 426 Coils Coil 332 380 - -
Trre8g04296 426 FunFam protein indeterminate-domain 12-like 36 105 - -
Trre8g04296 426 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 79 IPR013087 -
Trre8g04296 426 Pfam Zinc finger, C2H2 type 57 79 IPR013087 -
Trre8g04296 426 Gene3D Classic Zinc Finger 112 184 - -
Trre8g04296 426 SUPERFAMILY beta-beta-alpha zinc fingers 56 155 IPR036236 -
Trre8g04296 426 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 16 390 IPR031140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04296 Trre-Chr8 47464743 47467270 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04296 1 426 C2H2 Transcription Factor Family AT2G01940 55.310 1.21e-160 458
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre8g04296 zf-C2H2 0.004 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04296 K25871 - gmx:100806138 617.846