Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04291 ATGGAGAAAAATCCACTTCACCTCACTATAACACTCCTTCTTATGATCATCTTAACAGTTTTGTTTCCTATGACTACTTCTGAATCACTTTCTTCTATCAAAACTGATGCAAAAGCACTTCTTACATTCAAAAACTTGATTCAAAAAGATCCAAATGGAGTTTTATCAGGTTGGAATCTAAAAACAAATCCATGCACTTGGTATGGTATATCTTGCACACATGGAAGAGTAACTGGTCTTGATATTAGTGGAAGCAATGATATTTCTGATACTATTTCTCTTGATCCTTTATATTCCTTAAATATGTTATCTGTTCTAAAACTTTCTTTCAATTCATTTGCTGTAAATTCTACTTCTTTGCTTAAGTTACCATATAGTTTAACACAACTTGATCTATCTTTTGGTAACCTCACAGGTCCTATTCCTGAAACTTTTTTGTCTAAGTGTCCTAATCTTGTTGTTGTGAATCTTTCTTACAACAATTTGACAGGTTCAATACCTGAAAATTTCATGCAAAGTACTGATAAACTTCAGTCTCTTGATCTTTCTTCAAACAATTTGACAGGTTCAATTCCATCTAATTTCTCTTCTTGTACTTGGCTGCAAGTTGTTGATGTATCCAACAATAATATGACAGGTGAAATACCTGAGTCGGTGTTTCGGAGCCTTGGATCGTTGGAGGAACTTAGGTTGGGAAATAATGCTATCTCTATGAAATTTCCATCTTCAATATCATCATGCAAGAAATTGAGGATTGTTGATTTTAGTTCAAATAAAATTTATGGATCTATTCCTAGAGATTTGTGTCCAGGTGCAGCCTCACTTGAGGAGCTGAGAATGCCTGATAATCTTATAGCAGGTGAAATTCCAGCTGAATTGTCAAAGTGTTCACAATTGAAGACTATTGATTTTAGTTTGAACTATTTGAATGGTTCAATTCCTGATGAGTTAGGAGAACTTGAGAATCTTGAGCAGTTAATAGCATGGTTCAATGGTTTGGAAGGAAAAATTCCACCAAAGTTGGGACAATGTAAGAATCTTAAGGATCTTATATTGAATAATAATCACCTTAGTGGTGAAATTCCAATTGAGCTTTTCAATTGCAGTAATCTTGAGTGGATATCACTGACAAGCAATGAACTCACTGGCGAAATACCGCGAGAGTTTGGCCTTTTGACAAGGTTGGCAGTTCTTCAGCTTGGTAACAACAGGTTTACTGGTGAGATACCATCAGAGCTAGCAAATTGCAACAGTTTGGTGTGGTTGGACTTGAACAGCAACAAGCTTACAGGAGAGATCCCTCCTAGACTTGGCAGGCAGCAAGGAGCGAAATCGTTGTTTGGCATTCTTTCAGGAAACACTTTGGTGTTTGTAAGAAATGTCGGAAACTCGTGTAAAGGAGTTGGTGGTTTGCTAGAGTTCTCAGGAATCAGATCCGAACGGCTCTCACAGGTACCGACATTGAGGTCTTGTGATTTCACAAGACTGTATTCTGGTCCTGTACTCAGCTTGTTTACAAAATACCAGACACTAGAGTATCTTGATCTCTCCTACAACCAGCTTCGTGGAAAAATACCGGATGAATTCGGAGATATGGTGGCCTTACAGGTACTTGAATTGTCTCACAATCAACTATCTGGTGAAATCCCTTCAACCCTTGGACAGCTCAAAAATTTGGGAGTGTTTGATGCATCACATAATAGACTTCAGGGTCAAATCCCAGACTCATTCTCAAACCTATCATTTTTGGTGCAAATAGACTTATCTTACAATGAGTTAACAGGGCAAATTCCATCTAGGGGACAACTAAGTACGCTACCGGCCACTCAGTATGAAAACAATCCAGGCCTTTGCGGCGTTCCATTGCCCGAGTGCAAGAGTGGCAACAGCCAATCCTCATCAAGTCCAAGTGATGATTTTAGCAGAGGAGGCCAAAGAAGATCAGTTGCATCATGGGCTAACAACATTGTCATGGGAGTTCTCATTTCTGTGGCTTCTGTTTGCATTTTGATTGTGTGGGCGATCGCGATGCGTGTAAGGAGGAAAGAGGCCGAGGAAGTCAAGATGCTTAATAGGTTGCAAGCATGCCATGCTGCTACAACATGGAAAATTGACAAAGAGAAAGAGCCATTAAGCATTAATGTTGCAACATTTCAGAGGCAGTTAAGGAAACTTAAATTCTCACAGTTGATTGAAGCAACCAATGGATTCTCAGCAGAAAGCCTAATTGGCTGTGGAGGTTTTGGTGAAGTGTTCAAAGCTACACTCAAAGACGGATCATCTGTCGCGATAAAGAAGCTCATTCGATTGAGTTGCCAAGGCGATAGAGAATTCATGGCTGAGATGGAAACCTTAGGAAAAATCAAACACAGAAATCTTGTCCCTCTATTAGGATACTGCAAAGTAGGTGAAGAGAGACTCCTTGTTTATGAATACATGGAATACGGAAGCCTAGAAGAGATGCTCCACGGAAGAATAAAGACACGTGATCGCAGAATTTTAACATGGGAAGAAAGGAAGAAAATAGCAAGAGGTGCTGCCAAAGGACTTTGTTTTCTGCATCATAATTGCATCCCTCACATCATACACAGAGACATGAAATCAAGCAATGTGTTACTTGATCATGAAATGGAGTCAAGGGTCTCGGATTTCGGAATGGCAAGACTAATAAGTGCACTTGATACACACCTCAGTGTAAGCACACTAGCAGGAACACCCGGATATGTTCCACCAGAGTACTATCAAAGTTTTAGGTGCACTGCAAAGGGAGATGTTTATTCATTTGGTGTTGTAATGTTGGAACTTGTTAGTGGTAAACGTCCTACCGATAAAGAGGATTTTGGTGACACAAACTTGGTTGGATGGGCTAAGATTAAGGTGCGCGAAGGGAAACAAATGGAAGTAATTGACAATGATTTGCTTTTGGAGAGTCAAGGAGGAACAAATGAAGCAGAAGTAAAAGAAGTTAAAGAAATGATAAGATATTTGGAGGTAACTTTGCGGTGTGTCGATGATATGCCTTCTAAAAGGCCAAGCATGTTGCAGGTAGTGGCCATGTTGAGAGAGCTTATGCCTGGATCAAATGATGGAAGTAGCAACAGTGCTTAA 3108 0.3958 MEKNPLHLTITLLLMIILTVLFPMTTSESLSSIKTDAKALLTFKNLIQKDPNGVLSGWNLKTNPCTWYGISCTHGRVTGLDISGSNDISDTISLDPLYSLNMLSVLKLSFNSFAVNSTSLLKLPYSLTQLDLSFGNLTGPIPETFLSKCPNLVVVNLSYNNLTGSIPENFMQSTDKLQSLDLSSNNLTGSIPSNFSSCTWLQVVDVSNNNMTGEIPESVFRSLGSLEELRLGNNAISMKFPSSISSCKKLRIVDFSSNKIYGSIPRDLCPGAASLEELRMPDNLIAGEIPAELSKCSQLKTIDFSLNYLNGSIPDELGELENLEQLIAWFNGLEGKIPPKLGQCKNLKDLILNNNHLSGEIPIELFNCSNLEWISLTSNELTGEIPREFGLLTRLAVLQLGNNRFTGEIPSELANCNSLVWLDLNSNKLTGEIPPRLGRQQGAKSLFGILSGNTLVFVRNVGNSCKGVGGLLEFSGIRSERLSQVPTLRSCDFTRLYSGPVLSLFTKYQTLEYLDLSYNQLRGKIPDEFGDMVALQVLELSHNQLSGEIPSTLGQLKNLGVFDASHNRLQGQIPDSFSNLSFLVQIDLSYNELTGQIPSRGQLSTLPATQYENNPGLCGVPLPECKSGNSQSSSSPSDDFSRGGQRRSVASWANNIVMGVLISVASVCILIVWAIAMRVRRKEAEEVKMLNRLQACHAATTWKIDKEKEPLSINVATFQRQLRKLKFSQLIEATNGFSAESLIGCGGFGEVFKATLKDGSSVAIKKLIRLSCQGDREFMAEMETLGKIKHRNLVPLLGYCKVGEERLLVYEYMEYGSLEEMLHGRIKTRDRRILTWEERKKIARGAAKGLCFLHHNCIPHIIHRDMKSSNVLLDHEMESRVSDFGMARLISALDTHLSVSTLAGTPGYVPPEYYQSFRCTAKGDVYSFGVVMLELVSGKRPTDKEDFGDTNLVGWAKIKVREGKQMEVIDNDLLLESQGGTNEAEVKEVKEMIRYLEVTLRCVDDMPSKRPSMLQVVAMLRELMPGSNDGSSNSA 1035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04291 1035 FunFam serine/threonine-protein kinase BRI1-like 2 35 147 - -
Trre8g04291 1035 ProSiteProfiles Leucine-rich repeat profile. 176 198 IPR001611 GO:0005515
Trre8g04291 1035 Gene3D Ribonuclease Inhibitor 75 625 IPR032675 -
Trre8g04291 1035 SUPERFAMILY L domain-like 174 621 - -
Trre8g04291 1035 SUPERFAMILY L domain-like 58 219 - -
Trre8g04291 1035 Gene3D - 450 506 - -
Trre8g04291 1035 ProSitePatterns Protein kinases ATP-binding region signature. 743 766 IPR017441 GO:0005524
Trre8g04291 1035 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 503 625 - -
Trre8g04291 1035 Pfam Protein tyrosine and serine/threonine kinase 740 1020 IPR001245 GO:0004672|GO:0006468
Trre8g04291 1035 FunFam serine/threonine-protein kinase BRI1-like 2 698 812 - -
Trre8g04291 1035 Gene3D Phosphorylase Kinase; domain 1 696 812 - -
Trre8g04291 1035 Pfam Leucine rich repeat N-terminal domain 34 72 IPR013210 -
Trre8g04291 1035 CDD STKc_IRAK 743 1023 - -
Trre8g04291 1035 Pfam Brassinosteroid receptor island domain 447 505 IPR045381 -
Trre8g04291 1035 SMART LRR_typ_2 392 416 IPR003591 -
Trre8g04291 1035 SMART LRR_typ_2 418 440 IPR003591 -
Trre8g04291 1035 SMART LRR_typ_2 320 344 IPR003591 -
Trre8g04291 1035 SMART LRR_typ_2 345 368 IPR003591 -
Trre8g04291 1035 SMART LRR_typ_2 223 247 IPR003591 -
Trre8g04291 1035 SMART LRR_typ_2 532 556 IPR003591 -
Trre8g04291 1035 SMART LRR_typ_2 176 198 IPR003591 -
Trre8g04291 1035 SMART serkin_6 737 1024 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g04291 1035 MobiDBLite consensus disorder prediction 625 644 - -
Trre8g04291 1035 FunFam serine/threonine-protein kinase BRI1-like 2 813 1031 - -
Trre8g04291 1035 ProSitePatterns Serine/Threonine protein kinases active-site signature. 861 873 IPR008271 GO:0004672|GO:0006468
Trre8g04291 1035 ProSiteProfiles Protein kinase domain profile. 737 1024 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g04291 1035 PRINTS Leucine-rich repeat signature 177 190 - -
Trre8g04291 1035 PRINTS Leucine-rich repeat signature 532 545 - -
Trre8g04291 1035 MobiDBLite consensus disorder prediction 622 644 - -
Trre8g04291 1035 FunFam Leucine-rich repeat receptor protein kinase EMS1 362 458 - -
Trre8g04291 1035 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 265 361 - -
Trre8g04291 1035 Pfam Leucine rich repeat 176 236 IPR001611 GO:0005515
Trre8g04291 1035 Pfam Leucine rich repeat 504 545 IPR001611 GO:0005515
Trre8g04291 1035 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 307 1022 - -
Trre8g04291 1035 SUPERFAMILY Protein kinase-like (PK-like) 718 1020 IPR011009 -
Trre8g04291 1035 Gene3D Transferase(Phosphotransferase) domain 1 813 1033 - -
Trre8g04291 1035 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 170 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04291 Trre-Chr8 47407532 47410933 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04291 108 1023 Receptor kinase-like Gene Family AT1G55610 50.376 0.0 904
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Trre8g04291 PK_Tyr_Ser-Thr 1.1e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04291 - - mtr:120577570 1642.48