Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04290 ATGGAGAAAAATCCACTTCACCTCACTATAACACTCCTTCTTATGATCATCTTAACAGTTTTGTTTCCTATGACTACTTCTGAATCACTTTCTTCTATCAAAACTGATGCAAAAGCACTTCTTACATTCAAAAACTTGATTCAAAAAGATCCAAATGGAGTTTTATCAGGTTGGAATCTAAAAACAAATCCATGCACTTGGTATGGTATATCTTGCACACATGGAAGAGTAACTGGTCTTGATATTAGTGGAAGCAATGATATTTCTGATACTATTTCTCTTGATCCTTTATATTCCTTAAATATGTTATCTGTTCTAAAACTTTCTTTCAATTCATTTGCTGTAAATTCTACTTCTTTGCTTAAGTTACCATATAGTTTAACACAACTTGATCTATCTTTTGGTAACCTCACAGGTCCTATTCCTGAAACTTTTTTGTCTAAGTGTCCTAATCTTGTTGTTGTGAATCTTTCTTACAACAATTTGACAGGTTCAATACCTGAAAATTTCATGCAAAGTACTGATAAACTTCAGTCTCTTGATCTTTCTTCAAACAATTTGACAGGTTCAATATTTGGTTTGAAAATTGAGTACTGCAAATCATTGTTGCAACTTGATATATCAGGAAACCATTTATCTGACTCAATTCCATTTTCTTTGTCAAATTGTACTAGTCTTAAGAGTTTGAATTTAGCAAACAATCTTATTTCTGGTGGAATTCCAAAGAATTTGGGACAGTTGAATAAATTGCAGACTTTGGATCTTTCACATAATCAAATTACTGGTTGGATTCCTTCTGAGTTGGGAAATTTATGTGGTTCTCTTTTAGAACTTAAACTTTCTTTCAACAATATTACAGGTTCAATTCCATCTAATTTCTCTTCTTGTACTTGGCTGCAAGTTGTTGATGTATCCAACAATAATATGACAGGTGAAATACCTGAGTCGGTGTTTCGGAGCCTTGGATCGTTGGAGGAACTTAGGTTGGGAAATAATGCTATCTCTATGAAATTTCCATCTTCAATATCATCATGCAAGAAATTGAGGATTGTTGATTTTAGTTCAAATAAAATTTATGGATCTATTCCTAGAGATTTGTGTCCAGGTGCAGCCTCACTTGAGGAGCTGAGAATGCCTGATAATCTTATAGCAGGTGAAATTCCAGCTGAATTGTCAAAGTGTTCACAATTGAAGACTATTGATTTTAGTTTGAACTATTTGAATGGTTCAATTCCTGATGAGTTAGGAGAACTTGAGAATCTTGAGCAGTTAATAGCATGGTTCAATGGTTTGGAAGGAAAAATTCCACCAAAGTTGGGACAATGTAAGAATCTTAAGGATCTTATATTGAATAATAATCACCTTAGTGGTGAAATTCCAATTGAGCTTTTCAATTGCAGTAATCTTGAGTGGATATCACTGACAAGCAATGAACTCACTGGCGAAATACCGCGAGAGTTTGGCCTTTTGACAAGGTTGGCAGTTCTTCAGCTTGGTAACAACAGGTTTACTGGTGAGATACCATCAGAGCTAGCAAATTGCAACAGTTTGGTGTGGTTGGACTTGAACAGCAACAAGCTTACAGGAGAGATCCCTCCTAGACTTGGCAGGCAGCAAGGAGCGAAATCGTTGTTTGGCATTCTTTCAGGAAACACTTTGGTGTTTGTAAGAAATGTCGGAAACTCGTGTAAAGGAGTTGGTGGTTTGCTAGAGTTCTCAGGAATCAGATCCGAACGGCTCTCACAGGTACCGACATTGAGGTCTTGTGATTTCACAAGACTGTATTCTGGTCCTGTACTCAGCTTGTTTACAAAATACCAGACACTAGAGTATCTTGATCTCTCCTACAACCAGCTTCGTGGAAAAATACCGGATGAATTCGGAGATATGGTGGCCTTACAGGTACTTGAATTGTCTCACAATCAACTATCTGGTGAAATCCCTTCAACCCTTGGACAGCTCAAAAATTTGGGAGTGTTTGATGCATCACATAATAGACTTCAGGGTCAAATCCCAGACTCATTCTCAAACCTATCATTTTTGGTGCAAATAGACTTATCTTACAATGAGTTAACAGGGCAAATTCCATCTAGGGGACAACTAAGTACGCTACCGGCCACTCAGTATGAAAACAATCCAGGCCTTTGCGGCGTTCCATTGCCCGAGTGCAAGAGTGGCAACAGCCAATCCTCATCAAGTCCAAGTGATGATTTTAGCAGAGGAGGCCAAAGAAGATCAGTTGCATCATGGGCTAACAACATTGTCATGGGAGTTCTCATTTCTGTGGCTTCTGTTTGCATTTTGATTGTGTGGGCGATCGCGATGCGTGTAAGGAGGAAAGAGGCCGAGGAAGTCAAGATGCTTAATAGGTTGCAAGCATGCCATGCTGCTACAACATGGAAAATTGACAAAGAGAAAGAGCCATTAAGCATTAATGTTGCAACATTTCAGAGGCAGTTAAGGAAACTTAAATTCTCACAGTTGATTGAAGCAACCAATGGATTCTCAGCAGAAAGCCTAATTGGCTGTGGAGGTTTTGGTGAAGTGTTCAAAGCTACACTCAAAGACGGATCATCTGTCGCGATAAAGAAGCTCATTCGATTGAGTTGCCAAGGCGATAGAGAATTCATGGCTGAGATGGAAACCTTAGGAAAAATCAAACACAGAAATCTTGTCCCTCTATTAGGATACTGCAAAGTAGGTGAAGAGAGACTCCTTGTTTATGAATACATGGAATACGGAAGCCTAGAAGAGATGCTCCACGGAAGAATAAAGACACGTGATCGCAGAATTTTAACATGGGAAGAAAGGAAGAAAATAGCAAGAGGTGCTGCCAAAGGACTTTGTTTTCTGCATCATAATTGCATCCCTCACATCATACACAGAGACATGAAATCAAGCAATGTGTTACTTGATCATGAAATGGAGTCAAGGGTCTCGGATTTCGGAATGGCAAGACTAATAAGTGCACTTGATACACACCTCAGTGTAAGCACACTAGCAGGAACACCCGGATATGTTCCACCAGAGTACTATCAAAGTTTTAGGTGCACTGCAAAGGGAGATGTTTATTCATTTGGTGTTGTAATGTTGGAACTTGTTAGTGGTAAACGTCCTACCGATAAAGAGGATTTTGGTGACACAAACTTGGTTGGATGGGCTAAGATTAAGGTGCGCGAAGGGAAACAAATGGAAGTAATTGACAATGATTTGCTTTTGGAGAGTCAAGGAGGAACAAATGAAGCAGAAGTAAAAGAAGTTAAAGAAATGATAAGATATTTGGAGGTAACTTTGCGGTGTGTCGATGATATGCCTTCTAAAAGGCCAAGCATGTTGCAGGTAGTGGCCATGTTGAGAGAGCTTATGCCTGGATCAAATGATGGAAGTAGCAACAGTGCTTAA 3402 0.3883 MEKNPLHLTITLLLMIILTVLFPMTTSESLSSIKTDAKALLTFKNLIQKDPNGVLSGWNLKTNPCTWYGISCTHGRVTGLDISGSNDISDTISLDPLYSLNMLSVLKLSFNSFAVNSTSLLKLPYSLTQLDLSFGNLTGPIPETFLSKCPNLVVVNLSYNNLTGSIPENFMQSTDKLQSLDLSSNNLTGSIFGLKIEYCKSLLQLDISGNHLSDSIPFSLSNCTSLKSLNLANNLISGGIPKNLGQLNKLQTLDLSHNQITGWIPSELGNLCGSLLELKLSFNNITGSIPSNFSSCTWLQVVDVSNNNMTGEIPESVFRSLGSLEELRLGNNAISMKFPSSISSCKKLRIVDFSSNKIYGSIPRDLCPGAASLEELRMPDNLIAGEIPAELSKCSQLKTIDFSLNYLNGSIPDELGELENLEQLIAWFNGLEGKIPPKLGQCKNLKDLILNNNHLSGEIPIELFNCSNLEWISLTSNELTGEIPREFGLLTRLAVLQLGNNRFTGEIPSELANCNSLVWLDLNSNKLTGEIPPRLGRQQGAKSLFGILSGNTLVFVRNVGNSCKGVGGLLEFSGIRSERLSQVPTLRSCDFTRLYSGPVLSLFTKYQTLEYLDLSYNQLRGKIPDEFGDMVALQVLELSHNQLSGEIPSTLGQLKNLGVFDASHNRLQGQIPDSFSNLSFLVQIDLSYNELTGQIPSRGQLSTLPATQYENNPGLCGVPLPECKSGNSQSSSSPSDDFSRGGQRRSVASWANNIVMGVLISVASVCILIVWAIAMRVRRKEAEEVKMLNRLQACHAATTWKIDKEKEPLSINVATFQRQLRKLKFSQLIEATNGFSAESLIGCGGFGEVFKATLKDGSSVAIKKLIRLSCQGDREFMAEMETLGKIKHRNLVPLLGYCKVGEERLLVYEYMEYGSLEEMLHGRIKTRDRRILTWEERKKIARGAAKGLCFLHHNCIPHIIHRDMKSSNVLLDHEMESRVSDFGMARLISALDTHLSVSTLAGTPGYVPPEYYQSFRCTAKGDVYSFGVVMLELVSGKRPTDKEDFGDTNLVGWAKIKVREGKQMEVIDNDLLLESQGGTNEAEVKEVKEMIRYLEVTLRCVDDMPSKRPSMLQVVAMLRELMPGSNDGSSNSA 1133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04290 1133 Gene3D Ribonuclease Inhibitor 148 723 IPR032675 -
Trre8g04290 1133 Gene3D Ribonuclease Inhibitor 35 147 IPR032675 -
Trre8g04290 1133 Pfam Leucine rich repeat 202 260 IPR001611 GO:0005515
Trre8g04290 1133 Pfam Leucine rich repeat 299 358 IPR001611 GO:0005515
Trre8g04290 1133 Pfam Leucine rich repeat 602 643 IPR001611 GO:0005515
Trre8g04290 1133 Pfam Leucine rich repeat 126 187 IPR001611 GO:0005515
Trre8g04290 1133 SUPERFAMILY Protein kinase-like (PK-like) 816 1118 IPR011009 -
Trre8g04290 1133 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 272 362 - -
Trre8g04290 1133 FunFam Leucine-rich repeat receptor protein kinase EMS1 460 556 - -
Trre8g04290 1133 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 601 723 - -
Trre8g04290 1133 Pfam Brassinosteroid receptor island domain 545 603 IPR045381 -
Trre8g04290 1133 SUPERFAMILY L domain-like 371 722 - -
Trre8g04290 1133 Gene3D Transferase(Phosphotransferase) domain 1 911 1131 - -
Trre8g04290 1133 SUPERFAMILY L domain-like 35 271 - -
Trre8g04290 1133 Pfam Protein tyrosine and serine/threonine kinase 838 1118 IPR001245 GO:0004672|GO:0006468
Trre8g04290 1133 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 364 459 - -
Trre8g04290 1133 FunFam Calmodulin-binding receptor kinase CaMRLK 151 266 - -
Trre8g04290 1133 SMART LRR_typ_2 247 271 IPR003591 -
Trre8g04290 1133 SMART LRR_typ_2 516 538 IPR003591 -
Trre8g04290 1133 SMART LRR_typ_2 418 442 IPR003591 -
Trre8g04290 1133 SMART LRR_typ_2 321 345 IPR003591 -
Trre8g04290 1133 SMART LRR_typ_2 630 654 IPR003591 -
Trre8g04290 1133 SMART LRR_typ_2 490 514 IPR003591 -
Trre8g04290 1133 SMART LRR_typ_2 443 466 IPR003591 -
Trre8g04290 1133 Gene3D - 548 604 - -
Trre8g04290 1133 PRINTS Leucine-rich repeat signature 247 260 - -
Trre8g04290 1133 PRINTS Leucine-rich repeat signature 177 190 - -
Trre8g04290 1133 Pfam Leucine rich repeat N-terminal domain 34 72 IPR013210 -
Trre8g04290 1133 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 411 1120 - -
Trre8g04290 1133 SUPERFAMILY RNI-like 197 436 - -
Trre8g04290 1133 Gene3D Phosphorylase Kinase; domain 1 794 910 - -
Trre8g04290 1133 FunFam serine/threonine-protein kinase BRI1-like 2 35 147 - -
Trre8g04290 1133 FunFam serine/threonine-protein kinase BRI1-like 2 911 1129 - -
Trre8g04290 1133 CDD STKc_IRAK 841 1121 - -
Trre8g04290 1133 MobiDBLite consensus disorder prediction 720 742 - -
Trre8g04290 1133 FunFam serine/threonine-protein kinase BRI1-like 2 796 910 - -
Trre8g04290 1133 ProSitePatterns Serine/Threonine protein kinases active-site signature. 959 971 IPR008271 GO:0004672|GO:0006468
Trre8g04290 1133 ProSiteProfiles Leucine-rich repeat profile. 249 272 IPR001611 GO:0005515
Trre8g04290 1133 MobiDBLite consensus disorder prediction 723 742 - -
Trre8g04290 1133 ProSiteProfiles Protein kinase domain profile. 835 1122 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g04290 1133 ProSitePatterns Protein kinases ATP-binding region signature. 841 864 IPR017441 GO:0005524
Trre8g04290 1133 SMART serkin_6 835 1122 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04290 Trre-Chr8 47407532 47410933 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04290 40 1121 Receptor kinase-like Gene Family AT1G55610 48.085 0.0 993
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Trre8g04290 PK_Tyr_Ser-Thr 1.2e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04290 - - mtr:120577570 2019.59