Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04288 ATGGAGGAACAACAACCACTTCCCTTTTCACTTTCCCTTTCTGCTAAAGCTTCAGTTTCAGCTTCTTCAGAGAATCATTCAAATCCATCAGATGCAGTTATTTTCTTTGGTCTTAGTCTTGCTCTCGGAATTGCATGCAGACACCTTTTACGTGGAACAAGAATCCCTTACACTGTTGCTTTGCTCATCCTTGGCATTGCTATTGGATCCTTAGAATATGGTACTAATCATCGGCTGGGAAAGATTGGGGATGGAATTCGTCTTTGGTCAGAGATTGATCCAGAGCTCCTGTTAGCTGTTTTTCTTCCTGCTCTCCTTTTCGAGAGCGCATTCTCAATGGAAGTTCACCAAATTAAGAGATGTATTGCACAAATGATCCTATTAGGTGGTCCTGGAGTTGTGATTTCGACCGTTTTTCTTGGATCTGCTTTGAAGCTTACTTTTCCATATAACTGGAGTTGGAAAACGTCACTGTTGCTCGGGGGACTTCTGGGTGCAACTGATCCTGTTGCAGTTATAGCCTTGTTGAAAGACCTTGGTGCCAGCAAAAAGTTAAGCACAATAATTGAAGGGGAGTCCTTGATGAATGATGGGGTGGCTATTGTGGTTTATACCCTTTTCTATCGGATGGTTCTTGGAGAGACCTTTAACTGGGTTGCCATAATCAAATTTCTAGCACAAGTCTCACTTGGCGCTTTAGGAATTGGCATTGCTTTCGGGATTGCATCTGTTTTCTGGCTTGGGTTTATTTTTAATGATACAGTGATTGAGATTTCTCTAACACTCGCTGTTAGCTACATTGCTTACTACACTGCTCAAGAGAGTGCGGGTGTTTCTGGTGTTTTGACAGTGATGTCATTGGGAATGTTTTATGCTGCATTTGCAAGGACGGCTTTTAAGGGTGAAAGTCAACATAGCTTACATCACTTTTGGGAAATGATTGCTTATATCGCTAATACATTAGTTTTCATTTTGAGTGGAGTTGTTATAGCTGAAGGAGTACTTAGTGATGAACAAGTTTTCCATCATGGAAAATCATGGGTCTACCTCTTTCTTCTCTATGCCTATGTTCAAGTGTGTCGATGCATTGTTGTTGGAGCATTATTTCCCTTGCTAAGATATTTTGGATATGGTTTGGATTGGAAAGAGGCTATTATTCTCATCTGGTCTGGGTTGCGAGGAGCAGTTGCCTTGTCACTTTCACTATCGGTTAAGCGTTCGAGTGGCAGATCAATAGAATTGACTCCAGAAACAGGAACAATGTTTGTTTTCTTCACCGGTGGAATTGTGTTTCTAACACTTATAGTGAATGGTTCAACCACGCAGTTCATATTAGACTTCCTTGACTTGAATAAGTTATCATCAGCTAAGAGACGTATCCTTGAGTTTACAAAGTATGAAATGGTTAACAAAGCATTAGAAGCTTTTGGTGAACTTGGAGATGATGAGGAACTCGGGCCTGCTGACTGGCCCACAGTGAAGAGATATATTTCATGCTTAAATCACATTGAAGGTGAACGTGTTCATCCCCATGGTGCATCTGAAAGTGATAGTAACTTAGATCCTATGAATTTGGAAGACATACGAGTACGCCATCTGAATGGTGTCCAAGCTGCTTATTGGGAGATGCTTGATGAAGGCAGAATTACTCAAACAACAGCTAATATCCTAATGCTATCAGTGGAAGAATCAATAGATTTGGCTTCAACTGAGCCCCTATGTGACTGGAAAGGTTTAAAAGCTAATGTTCAATTCCCAAGTTACTATAAGCTCCTCCAGTCAAGTATGCTTCCACCGAAGTTAGTTACATACTTCACTGTAGAAAGGTTGGAGTCAGCATGTTATATTTGTGCTGCATTTCTTTGTGCCCACAGAATTGCTCGACAACAATTACACGACTTCATAGGTGACAGTGACATTGCTTCTGCTGTCATCAATGAAAGTGTTGCAGAGGGAGAAGAAGCACGGAAGTTCCTAGAAGATGTTAATTTAACATACCCTCAGGTTTTACGTGTTGTAAAGACAAGGCAAGCAACATATGTAGTGCTAAATCATTTACTTGAATATGTTCAAGACCTTGAGAAGTCTGGGATATTGGAAAAGAAAGAGATGCTACGTCTACATGATGCTGTCCAGACTGATTTAAAGAAATTACTTAGAAACCCTCCTTTGGTTAAGCTTCCTAAAATAAGTAATATACATCCTATGTTGGATGCGCTGCCATCTTCAGTTCGTGGACCACTTGTAAGCGGTTCAAAGGAAACAATGAAATTACGTGGCTCGACACTTTATAAGGAAGGTGCCGAATCAAATGGTATTTGGTTAATTTCTAATGGGGTGGTGAAGTGGGAAAGCAAAATGATTCAAAGCAATCACCCATTTTATCCAACTTTTACACATGGGAGCACATTGGGTCTTTACGAAGTGCTGACCGGAAGACCATATATCTGTAATGTTGTCACAGACTCCATCGTATTCTGTCATTTTGTTGAAGCAAACAAGATAATTTCTTGTCTCAAATCTGACCCTTCAATGGAAGACTTCCTGTGGCAGGAAAGTGCTATTTTCCTTTCCAAACTATTGCTTCCCCAGACATTTGAGAAACTAACTATGCAAGATTTAAGGGCTCTTATTGCTGAAAGATCTGAAATGACCATATATATAAGAGGGGAAACAATTGAAATCCCTTATCATTCAGTTGCCTTCTTACTAGAAGGATATATCAAAACTCAAGGTAGTCAAGAACTGGCAACCGCACCAGCAGCTCTGGTTCCTTTGCATGGGAATCGAAGCTTCCAAAATTTGTCAACGTCAGGTACTAAAGAAGGTAGTTTTATTCATCAAGGATCTTGTTATCTTGTTGAAACTAGAGCAAGGGTAATCGTGTTTGACATTGCTGCATTTGAGCCTGATGCTGCTCTTGTTAAAAAGTCAAGTCCGCGGTCGTTACATGCCGTGGATCATCCTCATAGTGGTCGACAACATAGTGGTCTTTTGAGTTGGCCTGAACATTTCTCCGCGCAGAATCAGCATAAACAGAGCTCTGAAAAACAAAGCAATAGTTTGTCTTCAAGGGCAATGCATCTGAGCATATATGGGAGCATGGTCGGTATCCCTCGCCCTAGACCACCGCCTCAAAGTTTGTCATATCCAACCTTTGTGCCATATCAAGGTCGTCCACTTGTCTCAGTCAAATCAGAAGGAGCTGCAACTGACAAAGAGACCATTGGAGTTAAGGGATTCATGCAAGATCCTACAAATCTCCCTTCACAAAGCACAGATAGAAGATTACATCATGAAGAAGATTCAAGTGATGATGAAGAAGATATTATTGTGAGAATTGATTCACCAAGCACACTATCGCCCCTCTTGAGGGGGAAGAGGTGA 3387 0.4095 MEEQQPLPFSLSLSAKASVSASSENHSNPSDAVIFFGLSLALGIACRHLLRGTRIPYTVALLILGIAIGSLEYGTNHRLGKIGDGIRLWSEIDPELLLAVFLPALLFESAFSMEVHQIKRCIAQMILLGGPGVVISTVFLGSALKLTFPYNWSWKTSLLLGGLLGATDPVAVIALLKDLGASKKLSTIIEGESLMNDGVAIVVYTLFYRMVLGETFNWVAIIKFLAQVSLGALGIGIAFGIASVFWLGFIFNDTVIEISLTLAVSYIAYYTAQESAGVSGVLTVMSLGMFYAAFARTAFKGESQHSLHHFWEMIAYIANTLVFILSGVVIAEGVLSDEQVFHHGKSWVYLFLLYAYVQVCRCIVVGALFPLLRYFGYGLDWKEAIILIWSGLRGAVALSLSLSVKRSSGRSIELTPETGTMFVFFTGGIVFLTLIVNGSTTQFILDFLDLNKLSSAKRRILEFTKYEMVNKALEAFGELGDDEELGPADWPTVKRYISCLNHIEGERVHPHGASESDSNLDPMNLEDIRVRHLNGVQAAYWEMLDEGRITQTTANILMLSVEESIDLASTEPLCDWKGLKANVQFPSYYKLLQSSMLPPKLVTYFTVERLESACYICAAFLCAHRIARQQLHDFIGDSDIASAVINESVAEGEEARKFLEDVNLTYPQVLRVVKTRQATYVVLNHLLEYVQDLEKSGILEKKEMLRLHDAVQTDLKKLLRNPPLVKLPKISNIHPMLDALPSSVRGPLVSGSKETMKLRGSTLYKEGAESNGIWLISNGVVKWESKMIQSNHPFYPTFTHGSTLGLYEVLTGRPYICNVVTDSIVFCHFVEANKIISCLKSDPSMEDFLWQESAIFLSKLLLPQTFEKLTMQDLRALIAERSEMTIYIRGETIEIPYHSVAFLLEGYIKTQGSQELATAPAALVPLHGNRSFQNLSTSGTKEGSFIHQGSCYLVETRARVIVFDIAAFEPDAALVKKSSPRSLHAVDHPHSGRQHSGLLSWPEHFSAQNQHKQSSEKQSNSLSSRAMHLSIYGSMVGIPRPRPPPQSLSYPTFVPYQGRPLVSVKSEGAATDKETIGVKGFMQDPTNLPSQSTDRRLHHEEDSSDDEEDIIVRIDSPSTLSPLLRGKR 1128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04288 1128 SUPERFAMILY cAMP-binding domain-like 734 850 IPR018490 -
Trre8g04288 1128 Gene3D Jelly Rolls 725 875 IPR014710 -
Trre8g04288 1128 PANTHER SODIUM/HYDROGEN EXCHANGER 20 800 IPR018422 GO:0006812|GO:0015385|GO:0016020|GO:1902600
Trre8g04288 1128 Pfam Sodium/hydrogen exchanger family 34 445 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
Trre8g04288 1128 ProSiteProfiles cAMP/cGMP binding motif profile. 736 821 IPR000595 -
Trre8g04288 1128 MobiDBLite consensus disorder prediction 1076 1128 - -
Trre8g04288 1128 Gene3D - 153 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04288 Trre-Chr8 47379501 47391777 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04288 29 1120 Antiporters AT2G01980 63.106 0.0 1358
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04288 K14726 - gmx:100789429 1743.4