Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04287 ATGGCGGTGTTTACAGAACAACAACAATCACTACTTACTTACAGAAACATGGAGGAACAACAACCACTTTCCCTTTCTGCTCCTTCTGCTTCAGTTTCAGTTTCTGCGTCTTCAGAAAATCATTCAAATCCATCAGATGCAGTTATTTTCTTTGGTCTTAGTCTTGCTCTTGGAATTGCTTGCAGACATCTTTTGCGTGGGACTAGAGTCCCTTACACTGTTGCTTTGCTTATCCTTGGCATTGCTCTTGGATCCTTAGAATATGGTACTCATCACCGGCTGGGAAAGATTGGGGATGGAATCCGTCTTTGGTCGGAGATTGATCCAGAGCTCCTGTTAGCCGTTTTTCTTCCTGCTCTCCTTTTTGAGAGCTCATTCTCAATGGAAGTTCACCAAATTAAGAGATGTATTGCACAAATGATCATACTAGCTGGTCCAGGTGTTGTGATTTCAACCATTTTTCTTGGATCTATGTTAAAGTTTACTTTTCCGTATAACTGGAGTTGGAAAACGTCGCTGTTGCTTGGGGGACTTCTGAGTGCAACTGATCCTGTTGCAGTTGTAGCCTTGTTGAAAGACCTTGGTGCCAGCAAAAAATTAAGCACAATAATTGAAGGGGAGTCCCTGATGAATGATGGGACGGCTATCGTGGTTTATACCCTTTTCTATCGAATGGTTCTTGGAGAGACCTTCAACTGGGTTGCCATAATCAAGTTTCTAGCACAAGTTTCACTTGGAGCTGTAGGAATTGGCCTTGCTTTCGGGATTGCATCCGTTTTATGGCTTGGGTTTATTTTTAATGATACAGTGATTGAGATTTCTTTAACACTTGCTGTTAGCTACATTGCTTACTACACTGCTCAAGAGAGTGCGGATGTTTCTGGTGTTTTGACAGTGATGTCACTGGGAATGTTCTATTCTGCATTTGCAAGAACAGCTTTTAAGGGTGAAAGTCAACAAAGCTTACATCACTTTTGGGAAATGATTGCTTATATTGCTAATACAATAATTTTCATTTTGAGTGGAGTTGTTATAGCTGAAGGAATACTTGGTGATGGCACAGTTTTCTCTCATGGAAAATCATGGATATACCTCTTTCTTCTCTATGCCTATGTTCAAGTGTCTCGATGCATTGTTGTTGGAGCATTATTTCCCTTTCTAAGATATTTTGGATATGGTTTGGATTGGAAAGAAGCTATTATTCTCATCTGGTCTGGGTTGCGAGGAGCAGTTGCCTTGTCACTTTCACTATCGGTTAAGCGTTCAAGCGGCAGATCAATTGAATTGACTCCAGAGACAGGAACAATGTTTGTTTTCTTCACTGGTGGAATTGTGTTTTTAACACTTATAGTGAATGGTTCAACCACACAGTTCATATTACACTTCCTTGGGATGAATAAGTTATCATCAGCTAAGAGACGTATCCTTGAGTTTACAAAGTATGAAATGGTTAACCAAGCATTAGAGGCTTTTGGTGAACTTGGAGATGATGAGGAACTTGGGCCTGCTGACTGGCCAACAGTGAAGAGATATATTTCCTGCTTAAATGACAGTGAAGGCGAACGTGTTCATCCTCATGGTCCATCTGAAAGTGACAATAACTTAGACCCTATGAATTTGAAAGACATACGAGTACGCCTTCTGAATGGTGTCCAAGCTGCTTACTGGGAGATGCTTGATGAAGGAAGAATTACTCAAACAACAGCTAATATCTTAATGCTATCAGTAGAGGAATCAATAGATTTGGCTTCATCTGAGCCCCTATGTGACTGGAAAGGTTTAAAATCTAATGTTCACTTCCCAAGTTACTACAAGTTCCTCCAGTCAAGTATGCTTCCACAGAAGTTAGTTACATACTTCACTGTGGAAAGGTTGGAGTCAGCATGTTATATTTGTGCTTCATTTCTTCGTGCCCACAGAATTGCTCGACAACAATTACATGACTTCATAGGTGACAGTGACGTTGCTTCTGCTGTCATCAATGAAAGTGTTACGGAGGGAGAAGAAGCACGAAAGTTCCTAGAAGATGTTAATTTGACATACCCTCAGGTTTTACGTGTTGTAAAGACAAGGCAAGCAACATATGTAGTGCTAAATCATTTACTTGAATATGTTCAAAACCTTGAGAAGGCTGGGATATTGGAAGAGAAAGAGATGCTACATCTTCATGATGCTGTCCAGACTGATTTAAAGAAATTACTTAGAAACCCTCCATTGGTTAAGCTTCCTAAAATAAGTAATATACATCCTATGTTGGATGCGCTGCCATCTTCAGTTCGTGGACCACTTGTAAGTGGTAGAAAGGAAACAATGAAATTGCGTGGCTTGACACTTTACAAGGAAGGTGCCAAATCAAATGGTATTTGGTTAATTTCTAATGGCGTGGTGAAGTGGGAAAGCAAGATGATTAAAAGCAAGCACCCTTTTTATCCAACTTTTACGCATGGGAGCACATTGGGTCTTTATGAAGTGCTGACCGGAAGACCATATATCTGTAATGTTGTCACAGACTCCATCGTGTTCTGCCTTTTTGTTGATGCAAATAAGATAATTTCATGTCTCAAATCTGACCCTTCAATGGAAGACTTCCTTTGGCAGGAAAGTGCTATTTTCCTTTCCAAACTATTGCTTCCTCAGATATTTGAGAAACGGACGGTGCAAGATTTAAGAGGTCTCATTGCTGAAAGATCTGAAATGACCATGTATATAAGAGGGGAAACAATTGAAATACCTTATCATTCAGTTGCCTTCTTACTGGAAGGATATGTCAAAATTCAAGGTCGTCAAGAACTGGTAACCGCACCAGCAGCTCTGGTTCCTTTGCATGGGAATCGAAGCTTCCAAAATTTGTCAATGTCAGGTATTATTAAGGAGGGTAGTTTTATTCATCAAGGATCTTGTTATCTGGTTGAAACTAGAGCAAGGGTAATTGTGTTTGACATTGCTGCATTTGAGCCTGATACTGCTCTTGTTAAAAAGTCAAGTTCACGGTCATCACATGCCATGGATCATCCTCGTAGATCTTTCCGTAAACAACGTAGTGGCCTTATGAGTTGGCCTGAACATTTCTACACGCAGAATCAGCATAACCAGAGCTCCAACAATCAAAGCAATAGTCTGTCTGCAAGGGCAATGCAGCTGAGCAAATATGGGAGCATGGTGGACATTCCTCACCGGAGTAGAAGTTTGTCAACCAATCGCTCTAGACAAACGCCTCAAAGTTTGTCATATCCAACCTTTGTGCCACATCAAGGTCGTCCACTTGGTTCAGTCAAATCAGAAGGAGCTGCAACTAGCAAAAAGGATATCGGAGTGAAAGGGTTCATGGAAGATGTTACAAATCTCCCTTCACAAAGCACAGATCGAAGAGTACATCATGAAAATGATTCAAGTGATGATGAAGAAGATATTATTGTGAGGATTGATTCACCAAGTACACTATCTTTTCGCCCGTCTTGA 3459 0.4062 MAVFTEQQQSLLTYRNMEEQQPLSLSAPSASVSVSASSENHSNPSDAVIFFGLSLALGIACRHLLRGTRVPYTVALLILGIALGSLEYGTHHRLGKIGDGIRLWSEIDPELLLAVFLPALLFESSFSMEVHQIKRCIAQMIILAGPGVVISTIFLGSMLKFTFPYNWSWKTSLLLGGLLSATDPVAVVALLKDLGASKKLSTIIEGESLMNDGTAIVVYTLFYRMVLGETFNWVAIIKFLAQVSLGAVGIGLAFGIASVLWLGFIFNDTVIEISLTLAVSYIAYYTAQESADVSGVLTVMSLGMFYSAFARTAFKGESQQSLHHFWEMIAYIANTIIFILSGVVIAEGILGDGTVFSHGKSWIYLFLLYAYVQVSRCIVVGALFPFLRYFGYGLDWKEAIILIWSGLRGAVALSLSLSVKRSSGRSIELTPETGTMFVFFTGGIVFLTLIVNGSTTQFILHFLGMNKLSSAKRRILEFTKYEMVNQALEAFGELGDDEELGPADWPTVKRYISCLNDSEGERVHPHGPSESDNNLDPMNLKDIRVRLLNGVQAAYWEMLDEGRITQTTANILMLSVEESIDLASSEPLCDWKGLKSNVHFPSYYKFLQSSMLPQKLVTYFTVERLESACYICASFLRAHRIARQQLHDFIGDSDVASAVINESVTEGEEARKFLEDVNLTYPQVLRVVKTRQATYVVLNHLLEYVQNLEKAGILEEKEMLHLHDAVQTDLKKLLRNPPLVKLPKISNIHPMLDALPSSVRGPLVSGRKETMKLRGLTLYKEGAKSNGIWLISNGVVKWESKMIKSKHPFYPTFTHGSTLGLYEVLTGRPYICNVVTDSIVFCLFVDANKIISCLKSDPSMEDFLWQESAIFLSKLLLPQIFEKRTVQDLRGLIAERSEMTMYIRGETIEIPYHSVAFLLEGYVKIQGRQELVTAPAALVPLHGNRSFQNLSMSGIIKEGSFIHQGSCYLVETRARVIVFDIAAFEPDTALVKKSSSRSSHAMDHPRRSFRKQRSGLMSWPEHFYTQNQHNQSSNNQSNSLSARAMQLSKYGSMVDIPHRSRSLSTNRSRQTPQSLSYPTFVPHQGRPLGSVKSEGAATSKKDIGVKGFMEDVTNLPSQSTDRRVHHENDSSDDEEDIIVRIDSPSTLSFRPS 1152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04287 1152 Gene3D Jelly Rolls 748 876 IPR014710 -
Trre8g04287 1152 ProSiteProfiles cAMP/cGMP binding motif profile. 751 846 IPR000595 -
Trre8g04287 1152 MobiDBLite consensus disorder prediction 1060 1152 - -
Trre8g04287 1152 MobiDBLite consensus disorder prediction 992 1012 - -
Trre8g04287 1152 PANTHER SODIUM/HYDROGEN EXCHANGER 35 804 IPR018422 GO:0006812|GO:0015385|GO:0016020|GO:1902600
Trre8g04287 1152 SUPERFAMILY cAMP-binding domain-like 749 865 IPR018490 -
Trre8g04287 1152 MobiDBLite consensus disorder prediction 1120 1140 - -
Trre8g04287 1152 Pfam Sodium/hydrogen exchanger family 49 460 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
Trre8g04287 1152 Gene3D - 168 220 - -
Trre8g04287 1152 MobiDBLite consensus disorder prediction 1060 1080 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04287 Trre-Chr8 47366127 47376902 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04287 44 1150 Antiporters AT2G01980 64.107 0.0 1407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04287 K14726 - gmx:100789429 1812.73